Variant report

Variant	rs4948341
Chromosome Location	chr10:61369156-61369157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10128218	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10733987	0.83[ASN][1000 genomes]
rs10763611	0.85[ASN][1000 genomes]
rs1875148	0.94[ASN][1000 genomes]
rs1875150	0.85[ASN][1000 genomes]
rs1909624	1.00[ASN][1000 genomes]
rs1909626	1.00[ASN][1000 genomes]
rs1909627	0.97[ASN][1000 genomes]
rs1909629	0.97[ASN][1000 genomes]
rs1909631	0.85[ASN][1000 genomes]
rs1909634	0.85[ASN][1000 genomes]
rs1909636	0.85[ASN][1000 genomes]
rs1909637	0.97[ASN][1000 genomes]
rs1909640	0.85[ASN][1000 genomes]
rs1909641	0.97[ASN][1000 genomes]
rs2126775	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2169686	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3999577	0.91[ASN][1000 genomes]
rs4948234	0.91[ASN][1000 genomes]
rs4948335	0.85[ASN][1000 genomes]
rs4948336	0.97[ASN][1000 genomes]
rs4948337	0.83[ASN][1000 genomes]
rs4948340	0.89[ASN][1000 genomes]
rs4948342	0.85[ASN][1000 genomes]
rs6481470	0.94[ASN][1000 genomes]
rs7097223	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7098214	0.85[ASN][1000 genomes]
rs7900692	0.97[ASN][1000 genomes]
rs7901109	0.97[ASN][1000 genomes]
rs7905405	0.85[ASN][1000 genomes]
rs7905991	1.00[ASN][1000 genomes]
rs7909725	1.00[ASN][1000 genomes]
rs7911814	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv437683	chr10:61354446-61369980	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv437118	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv437119	chr10:61358382-61372357	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv467290	chr10:61358382-61378404	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv467291	chr10:61358382-61378404	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv551151	chr10:61358382-61378404	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61368400-61369800	Enhancers	Colon Smooth Muscle	Colon
2	chr10:61368600-61369200	Enhancers	Placenta	Placenta
3	chr10:61368800-61373000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:61369000-61369200	Enhancers	Hela-S3	cervix
5	chr10:61369000-61369400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:61369000-61373800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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