Variant report
| Variant | rs7901109 |
|---|---|
| Chromosome Location | chr10:61332661-61332662 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10733987 | 0.86[ASN][1000 genomes] |
| rs10763611 | 0.88[ASN][1000 genomes] |
| rs1875148 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1875150 | 0.88[ASN][1000 genomes] |
| rs1909624 | 0.97[ASN][1000 genomes] |
| rs1909626 | 1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1909627 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1909629 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1909631 | 0.88[ASN][1000 genomes] |
| rs1909634 | 0.88[ASN][1000 genomes] |
| rs1909636 | 0.88[ASN][1000 genomes] |
| rs1909637 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1909640 | 0.88[ASN][1000 genomes] |
| rs1909641 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2126775 | 0.97[ASN][1000 genomes] |
| rs2169686 | 0.97[ASN][1000 genomes] |
| rs3999577 | 0.88[ASN][1000 genomes] |
| rs4948234 | 0.88[ASN][1000 genomes] |
| rs4948335 | 0.88[ASN][1000 genomes] |
| rs4948336 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4948337 | 0.86[ASN][1000 genomes] |
| rs4948340 | 0.86[ASN][1000 genomes] |
| rs4948341 | 0.97[ASN][1000 genomes] |
| rs4948342 | 0.82[ASN][1000 genomes] |
| rs6481470 | 0.91[ASN][1000 genomes] |
| rs7097223 | 0.83[ASN][1000 genomes] |
| rs7098214 | 0.82[ASN][1000 genomes] |
| rs7900692 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7905405 | 0.82[ASN][1000 genomes] |
| rs7905991 | 0.97[ASN][1000 genomes] |
| rs7909725 | 0.97[ASN][1000 genomes] |
| rs7911814 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757394 | chr10:61324135-61333139 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv2759762 | chr10:61324135-61333139 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:61331400-61336200 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
