Variant report

Variant	rs10763611
Chromosome Location	chr10:61348695-61348696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr10:61348553-61348962	A549	lung:	n/a	n/a
2	GABPA	chr10:61348543-61348981	MCF-7	breast:	n/a	n/a
3	GABPA	chr10:61348599-61348819	Hela-S3	cervix:	n/a	n/a
4	GABPA	chr10:61348524-61348937	SK-N-SH	brain:	n/a	n/a
5	GABPA	chr10:61348581-61348886	A549	lung:	n/a	n/a
6	GABPA	chr10:61348496-61348950	SK-N-SH	brain:	n/a	n/a
7	YY1	chr10:61348644-61348860	SK-N-SH_RA	brain:	n/a	n/a
8	GABPA	chr10:61348665-61348799	GM12878	blood:	n/a	n/a
9	YY1	chr10:61348679-61348861	HCT-116	colon:	n/a	n/a
10	GABPA	chr10:61348549-61348811	K562	blood:	n/a	n/a
11	GABPA	chr10:61348402-61348794	K562	blood:	n/a	n/a
12	HCFC1	chr10:61348662-61348832	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000235140	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10128472	0.89[EUR][1000 genomes]
rs10733987	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006591	0.93[EUR][1000 genomes]
rs11006596	0.93[EUR][1000 genomes]
rs11006601	0.89[EUR][1000 genomes]
rs12354454	0.89[EUR][1000 genomes]
rs12355623	0.89[EUR][1000 genomes]
rs17774253	0.93[EUR][1000 genomes]
rs1875148	0.85[ASN][1000 genomes]
rs1875150	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909624	0.85[ASN][1000 genomes]
rs1909625	0.97[EUR][1000 genomes]
rs1909626	0.85[ASN][1000 genomes]
rs1909627	0.88[ASN][1000 genomes]
rs1909629	0.88[ASN][1000 genomes]
rs1909631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909637	0.88[ASN][1000 genomes]
rs1909640	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909641	0.88[ASN][1000 genomes]
rs2126775	0.85[ASN][1000 genomes]
rs2169686	0.85[ASN][1000 genomes]
rs34473910	0.93[EUR][1000 genomes]
rs34777137	0.89[EUR][1000 genomes]
rs35237633	0.87[EUR][1000 genomes]
rs35244321	0.93[EUR][1000 genomes]
rs35620829	0.87[EUR][1000 genomes]
rs35652472	0.93[EUR][1000 genomes]
rs36014643	0.84[EUR][1000 genomes]
rs4421701	0.96[EUR][1000 genomes]
rs4423134	0.90[EUR][1000 genomes]
rs4948335	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948336	0.88[ASN][1000 genomes]
rs4948337	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948341	0.85[ASN][1000 genomes]
rs6481469	0.96[EUR][1000 genomes]
rs6481470	0.80[ASN][1000 genomes]
rs67956419	0.89[EUR][1000 genomes]
rs7900692	0.88[ASN][1000 genomes]
rs7901109	0.88[ASN][1000 genomes]
rs7905991	0.85[ASN][1000 genomes]
rs7908064	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7909725	0.85[ASN][1000 genomes]
rs7911814	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
2	chr10:61345600-61349200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:61347800-61349400	Weak transcription	NHEK	skin
5	chr10:61348400-61351200	Weak transcription	Rectal Mucosa Donor 31	rectum

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