Variant report

Variant	rs35620829
Chromosome Location	chr10:61319858-61319859
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:61316394..61318901-chr10:61319114..61321714,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10128472	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509111	1.00[ASN][1000 genomes]
rs10733987	0.90[EUR][1000 genomes]
rs10763611	0.87[EUR][1000 genomes]
rs10826333	1.00[ASN][1000 genomes]
rs10826334	1.00[ASN][1000 genomes]
rs11006591	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006596	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006601	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354454	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355623	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358070	1.00[ASN][1000 genomes]
rs17774253	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875150	0.90[EUR][1000 genomes]
rs1909625	0.85[EUR][1000 genomes]
rs1909631	0.87[EUR][1000 genomes]
rs1909634	0.87[EUR][1000 genomes]
rs1909636	0.87[EUR][1000 genomes]
rs1909640	0.91[EUR][1000 genomes]
rs34414463	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473910	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34777137	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35244321	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35652472	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36014643	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421701	0.86[EUR][1000 genomes]
rs4423134	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948335	0.90[EUR][1000 genomes]
rs4948337	0.90[EUR][1000 genomes]
rs4948340	0.88[EUR][1000 genomes]
rs6481469	0.86[EUR][1000 genomes]
rs67956419	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895564	chr10:61220923-61327502	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv551150	chr10:61286904-61330297	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3693063	chr10:61316344-61331087	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61313600-61320800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:61316200-61321400	Enhancers	Fetal Lung	lung
3	chr10:61317600-61324000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:61318000-61320600	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:61318000-61321000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:61318200-61320200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:61318200-61320800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:61318400-61320200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:61319200-61320400	Enhancers	Fetal Heart	heart
10	chr10:61319600-61322200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:61319800-61321000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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