Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHYHIPL-3	chr10:61356083-61356179	ENSG00000235140

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10128472	0.87[EUR][1000 genomes]
rs10733987	0.93[EUR][1000 genomes]
rs10733988	0.95[ASN][1000 genomes]
rs10763611	0.96[EUR][1000 genomes]
rs10826326	0.89[ASN][1000 genomes]
rs11006591	0.92[EUR][1000 genomes]
rs11006596	0.92[EUR][1000 genomes]
rs11006601	0.87[EUR][1000 genomes]
rs12354454	0.87[EUR][1000 genomes]
rs12355623	0.87[EUR][1000 genomes]
rs17774253	0.92[EUR][1000 genomes]
rs1875150	0.93[EUR][1000 genomes]
rs1909625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1909631	0.96[EUR][1000 genomes]
rs1909634	0.96[EUR][1000 genomes]
rs1909636	0.96[EUR][1000 genomes]
rs1909640	0.92[EUR][1000 genomes]
rs34473910	0.92[EUR][1000 genomes]
rs34777137	0.87[EUR][1000 genomes]
rs35237633	0.86[EUR][1000 genomes]
rs35244321	0.92[EUR][1000 genomes]
rs35620829	0.86[EUR][1000 genomes]
rs35652472	0.92[EUR][1000 genomes]
rs36014643	0.83[EUR][1000 genomes]
rs4423134	0.89[EUR][1000 genomes]
rs4948335	0.93[EUR][1000 genomes]
rs4948337	0.93[EUR][1000 genomes]
rs4948340	0.97[EUR][1000 genomes]
rs6481469	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67956419	0.87[EUR][1000 genomes]
rs7908064	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895566	chr10:61350192-61379398	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv437684	chr10:61354446-61367720	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv437683	chr10:61354446-61369980	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61355200-61356400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:61355600-61366800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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