Variant report
| Variant | rs1909625 |
|---|---|
| Chromosome Location | chr10:61353075-61353076 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10128472 | 0.86[EUR][1000 genomes] |
| rs10733987 | 0.94[EUR][1000 genomes] |
| rs10733988 | 0.95[ASN][1000 genomes] |
| rs10763611 | 0.97[EUR][1000 genomes] |
| rs10826326 | 0.89[ASN][1000 genomes] |
| rs11006591 | 0.90[EUR][1000 genomes] |
| rs11006596 | 0.90[EUR][1000 genomes] |
| rs11006601 | 0.86[EUR][1000 genomes] |
| rs12354454 | 0.86[EUR][1000 genomes] |
| rs12355623 | 0.86[EUR][1000 genomes] |
| rs17774253 | 0.90[EUR][1000 genomes] |
| rs1875150 | 0.94[EUR][1000 genomes] |
| rs1909631 | 0.97[EUR][1000 genomes] |
| rs1909634 | 0.97[EUR][1000 genomes] |
| rs1909636 | 0.97[EUR][1000 genomes] |
| rs1909640 | 0.93[EUR][1000 genomes] |
| rs34473910 | 0.90[EUR][1000 genomes] |
| rs34777137 | 0.86[EUR][1000 genomes] |
| rs35237633 | 0.85[EUR][1000 genomes] |
| rs35244321 | 0.90[EUR][1000 genomes] |
| rs35620829 | 0.85[EUR][1000 genomes] |
| rs35652472 | 0.90[EUR][1000 genomes] |
| rs36014643 | 0.82[EUR][1000 genomes] |
| rs4421701 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4423134 | 0.87[EUR][1000 genomes] |
| rs4948335 | 0.94[EUR][1000 genomes] |
| rs4948337 | 0.94[EUR][1000 genomes] |
| rs4948340 | 0.96[EUR][1000 genomes] |
| rs6481469 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67956419 | 0.86[EUR][1000 genomes] |
| rs7908064 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895565 | chr10:61347537-61379398 | Weak transcription Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv895566 | chr10:61350192-61379398 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:61345600-61353400 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
| 2 | chr10:61352800-61354400 | Enhancers | Rectal Mucosa Donor 31 | rectum |
