Variant report

Variant	rs11006591
Chromosome Location	chr10:61345562-61345563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr10:61344618-61345602	SK-N-SH	brain:	n/a	n/a
2	EP300	chr10:61344649-61345606	SK-N-SH	brain:	n/a	chr10:61345110-61345124
3	GATA3	chr10:61344595-61345625	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr10:61344731-61345724	PFSK-1	brain:	n/a	n/a
5	TCF12	chr10:61344605-61345614	SK-N-SH	brain:	n/a	n/a
6	TCF12	chr10:61344652-61345579	SK-N-SH	brain:	n/a	n/a
7	JUND	chr10:61344637-61345570	SK-N-SH	brain:	n/a	n/a
8	EP300	chr10:61344783-61345563	SK-N-SH	brain:	n/a	chr10:61345110-61345124

Variant related genes	Relation type
ENSG00000235140	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10128472	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509111	1.00[ASN][1000 genomes]
rs10733987	0.90[EUR][1000 genomes]
rs10763611	0.93[EUR][1000 genomes]
rs10826333	1.00[ASN][1000 genomes]
rs10826334	1.00[ASN][1000 genomes]
rs11006596	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006601	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354454	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355623	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358070	1.00[ASN][1000 genomes]
rs17774253	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875150	0.90[EUR][1000 genomes]
rs1909625	0.90[EUR][1000 genomes]
rs1909631	0.93[EUR][1000 genomes]
rs1909634	0.93[EUR][1000 genomes]
rs1909636	0.93[EUR][1000 genomes]
rs1909640	0.88[EUR][1000 genomes]
rs34414463	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34777137	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237633	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35244321	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35620829	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35652472	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36014643	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421701	0.92[EUR][1000 genomes]
rs4423134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948335	0.90[EUR][1000 genomes]
rs4948337	0.90[EUR][1000 genomes]
rs4948340	0.94[EUR][1000 genomes]
rs6481469	0.92[EUR][1000 genomes]
rs67956419	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340200-61347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
3	chr10:61341000-61346000	Enhancers	Colon Smooth Muscle	Colon
4	chr10:61342600-61345800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:61342800-61345800	Weak transcription	Brain Anterior Caudate	brain
6	chr10:61343000-61347000	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:61343800-61346800	Enhancers	Rectal Smooth Muscle	rectum
8	chr10:61344200-61345600	Enhancers	Brain Cingulate Gyrus	brain
9	chr10:61344200-61345600	Enhancers	Brain Hippocampus Middle	brain
10	chr10:61344200-61345800	Enhancers	Brain Substantia Nigra	brain
11	chr10:61344400-61345600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:61344400-61345600	Enhancers	HSMM	muscle
13	chr10:61344400-61346400	Enhancers	HSMMtube	muscle
14	chr10:61344800-61345600	Enhancers	HMEC	breast
15	chr10:61345200-61345600	Enhancers	Brain Angular Gyrus	brain
16	chr10:61345400-61345600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:61345400-61345600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:61345400-61345600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:61345400-61345600	Enhancers	Hela-S3	cervix
20	chr10:61345400-61347800	Enhancers	Esophagus	oesophagus
21	chr10:61345400-61348000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr10:61345400-61348400	Enhancers	Rectal Mucosa Donor 31	rectum

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