Variant report

Variant	rs34473910
Chromosome Location	chr10:61349666-61349667
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10128472	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509111	1.00[ASN][1000 genomes]
rs10733987	0.90[EUR][1000 genomes]
rs10763611	0.93[EUR][1000 genomes]
rs10826333	1.00[ASN][1000 genomes]
rs10826334	1.00[ASN][1000 genomes]
rs11006591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006596	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006601	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354454	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355623	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358070	1.00[ASN][1000 genomes]
rs17774253	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1875150	0.90[EUR][1000 genomes]
rs1909625	0.90[EUR][1000 genomes]
rs1909631	0.93[EUR][1000 genomes]
rs1909634	0.93[EUR][1000 genomes]
rs1909636	0.93[EUR][1000 genomes]
rs1909640	0.88[EUR][1000 genomes]
rs34414463	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34777137	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237633	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35244321	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35620829	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35652472	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36014643	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421701	0.92[EUR][1000 genomes]
rs4423134	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948335	0.90[EUR][1000 genomes]
rs4948337	0.90[EUR][1000 genomes]
rs4948340	0.94[EUR][1000 genomes]
rs6481469	0.92[EUR][1000 genomes]
rs67956419	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895565	chr10:61347537-61379398	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:61348400-61351200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:61349200-61349800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links