Variant report

Variant	rs17774253
Chromosome Location	chr10:61345802-61345803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:61345780-61346670	PFSK-1	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000235140	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10128472	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509111	1.00[ASN][1000 genomes]
rs10733987	0.90[EUR][1000 genomes]
rs10763611	0.93[EUR][1000 genomes]
rs10826333	1.00[ASN][1000 genomes]
rs10826334	1.00[ASN][1000 genomes]
rs11006591	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006596	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006601	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354454	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12355623	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358070	1.00[ASN][1000 genomes]
rs1875150	0.90[EUR][1000 genomes]
rs1909625	0.90[EUR][1000 genomes]
rs1909631	0.93[EUR][1000 genomes]
rs1909634	0.93[EUR][1000 genomes]
rs1909636	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs1909640	0.93[CEU][hapmap];0.88[EUR][1000 genomes]
rs34414463	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473910	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34777137	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35237633	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35244321	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35620829	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35652472	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36014643	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421701	0.92[EUR][1000 genomes]
rs4423134	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948335	0.90[EUR][1000 genomes]
rs4948337	0.90[EUR][1000 genomes]
rs4948340	0.94[EUR][1000 genomes]
rs6481469	0.92[EUR][1000 genomes]
rs67956419	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908064	1.00[CEU][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340200-61347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
3	chr10:61341000-61346000	Enhancers	Colon Smooth Muscle	Colon
4	chr10:61343000-61347000	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:61343800-61346800	Enhancers	Rectal Smooth Muscle	rectum
6	chr10:61344400-61346400	Enhancers	HSMMtube	muscle
7	chr10:61345400-61347800	Enhancers	Esophagus	oesophagus
8	chr10:61345400-61348000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:61345400-61348400	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr10:61345600-61346200	Weak transcription	Hela-S3	cervix
11	chr10:61345600-61346600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:61345600-61346600	Weak transcription	HMEC	breast
13	chr10:61345600-61346800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:61345600-61346800	Weak transcription	Brain Angular Gyrus	brain
15	chr10:61345600-61349200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:61345800-61346000	Enhancers	Brain Anterior Caudate	brain

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