Variant report

Variant	rs9609663
Chromosome Location	chr22:33342372-33342373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1010432	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13054969	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs137554	0.87[ASN][1000 genomes]
rs2016169	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2020103	0.83[AMR][1000 genomes]
rs35640347	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs756550	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs916396	0.85[ASN][1000 genomes]
rs9606998	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9609652	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9609653	0.81[ASN][1000 genomes]
rs9609654	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9609655	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9609656	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9609657	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9609658	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33331400-33342800	Weak transcription	Fetal Heart	heart
3	chr22:33338000-33345200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33340200-33346000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr22:33341600-33349600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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