Variant report

Variant	rs9609653
Chromosome Location	chr22:33307066-33307067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1010432	0.84[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13054969	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13057857	0.88[MEX][hapmap]
rs2016169	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35640347	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs756550	0.88[CHD][hapmap];0.83[MEX][hapmap]
rs916396	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9606997	0.86[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9606998	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9609647	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9609648	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9609649	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9609651	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9609652	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9609654	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609655	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9609656	0.91[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609657	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9609658	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609663	0.81[ASN][1000 genomes]
rs9609680	0.81[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9609653	RHBDD3	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33287800-33309600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:33287800-33312000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr22:33290000-33312000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33302400-33307200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr22:33304600-33308000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr22:33305000-33307800	Enhancers	Colon Smooth Muscle	Colon
7	chr22:33305000-33308200	Enhancers	Fetal Lung	lung
8	chr22:33305000-33308200	Enhancers	Fetal Stomach	stomach
9	chr22:33305200-33307600	Enhancers	Rectal Smooth Muscle	rectum
10	chr22:33305600-33307800	Enhancers	Brain Hippocampus Middle	brain
11	chr22:33305600-33308000	Enhancers	Fetal Brain Female	brain
12	chr22:33305600-33308000	Enhancers	Ovary	ovary
13	chr22:33305800-33307600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr22:33305800-33308000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr22:33306000-33307400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr22:33306200-33307400	Weak transcription	Brain Germinal Matrix	brain
17	chr22:33306200-33307600	Weak transcription	Brain Anterior Caudate	brain
18	chr22:33306400-33308000	Enhancers	Fetal Kidney	kidney
19	chr22:33306600-33308000	Enhancers	Stomach Smooth Muscle	stomach
20	chr22:33306600-33308200	Enhancers	Fetal Brain Male	brain
21	chr22:33306800-33307400	Enhancers	K562	blood
22	chr22:33306800-33307800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr22:33307000-33307200	Enhancers	Brain Substantia Nigra	brain
24	chr22:33307000-33307400	Bivalent Enhancer	Brain Angular Gyrus	brain
25	chr22:33307000-33308000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr22:33307000-33308000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr22:33307000-33308000	Enhancers	Fetal Muscle Leg	muscle

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