Variant report

Variant	rs9609647
Chromosome Location	chr22:33275564-33275565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1010432	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13054969	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13057857	0.83[AMR][1000 genomes]
rs2016169	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35640347	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9606997	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9606998	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9609648	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609649	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9609651	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9609652	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9609653	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9609654	0.83[AMR][1000 genomes]
rs9609655	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9609656	0.83[AMR][1000 genomes]
rs9609657	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9609658	0.87[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33237400-33282200	Weak transcription	Fetal Brain Female	brain
2	chr22:33257800-33282000	Weak transcription	HepG2	liver
3	chr22:33265200-33282000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr22:33270800-33287200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr22:33271200-33276200	Weak transcription	Lung	lung
7	chr22:33271400-33276200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr22:33271600-33276600	Weak transcription	Thymus	Thymus
9	chr22:33272000-33276000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr22:33272000-33276400	Weak transcription	Spleen	Spleen
11	chr22:33273800-33276200	Weak transcription	Right Atrium	heart
12	chr22:33274200-33286200	Enhancers	Fetal Heart	heart
13	chr22:33274400-33277600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr22:33275000-33280200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr22:33275400-33276400	Enhancers	K562	blood
16	chr22:33275400-33277200	Enhancers	Fetal Thymus	thymus
17	chr22:33275400-33279600	Enhancers	Primary hematopoietic stem cells	blood
18	chr22:33275400-33279600	Enhancers	Fetal Muscle Leg	muscle
19	chr22:33275400-33285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links