Variant report

Variant	rs9609651
Chromosome Location	chr22:33284766-33284767
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1010432	0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12169637	0.92[YRI][hapmap]
rs13054969	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13057857	0.82[AMR][1000 genomes]
rs137512	0.93[YRI][hapmap]
rs137518	0.92[YRI][hapmap]
rs2016169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35640347	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs916396	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs9606997	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9606998	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609647	0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9609648	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609649	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9609652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609653	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9609654	0.89[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9609655	0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9609656	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9609657	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9609658	0.89[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9609680	0.80[CHB][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:33270800-33287200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr22:33274200-33286200	Enhancers	Fetal Heart	heart
4	chr22:33275400-33285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr22:33277000-33284800	Weak transcription	Ovary	ovary
6	chr22:33277000-33302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr22:33277600-33285000	Weak transcription	Left Ventricle	heart
8	chr22:33279600-33287000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr22:33280000-33284800	Weak transcription	Fetal Kidney	kidney
10	chr22:33280000-33287400	Weak transcription	Fetal Thymus	thymus
11	chr22:33281800-33285200	Enhancers	K562	blood
12	chr22:33282200-33284800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr22:33282200-33285200	Enhancers	Fetal Lung	lung
14	chr22:33282200-33289400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr22:33283000-33285000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr22:33283000-33289200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr22:33283400-33285000	Enhancers	Colon Smooth Muscle	Colon
18	chr22:33283600-33299600	Weak transcription	Right Atrium	heart
19	chr22:33283800-33284800	Weak transcription	Right Ventricle	heart
20	chr22:33283800-33285400	Enhancers	HSMMtube	muscle
21	chr22:33284200-33285000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr22:33284400-33285400	Enhancers	Fetal Muscle Leg	muscle
23	chr22:33284400-33287400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr22:33284600-33285400	Enhancers	Fetal Brain Male	brain

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