Variant report

Variant	rs9606997
Chromosome Location	chr22:33286018-33286019
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1010432	0.95[JPT][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12169637	0.92[YRI][hapmap]
rs13054969	0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13057857	0.82[AMR][1000 genomes]
rs137512	0.83[JPT][hapmap];0.93[YRI][hapmap]
rs137518	0.82[JPT][hapmap];0.92[YRI][hapmap]
rs2016169	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35640347	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs916396	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs9606998	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609647	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609648	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9609649	1.00[CEU][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609651	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9609652	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609653	0.86[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9609654	0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9609655	0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9609656	0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9609657	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9609658	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:33270800-33287200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr22:33274200-33286200	Enhancers	Fetal Heart	heart
4	chr22:33277000-33302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr22:33279600-33287000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr22:33280000-33287400	Weak transcription	Fetal Thymus	thymus
7	chr22:33282200-33289400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr22:33283000-33289200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr22:33283600-33299600	Weak transcription	Right Atrium	heart
10	chr22:33284400-33287400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr22:33285400-33287200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links