Variant report

Variant	rs9609648
Chromosome Location	chr22:33277990-33277991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:33275938..33278080-chr22:33280895..33283450,2	K562	blood:
2	chr22:33277550..33279895-chr22:33281919..33283776,2	K562	blood:
3	chr22:33252312..33253945-chr22:33277118..33278817,2	K562	blood:
4	22:32920308-32927723..22:33273392-33279610	K562	blood:
5	chr22:33277494..33279713-chr22:33299469..33301691,2	K562	blood:
6	22:32292186-32294405..22:33273392-33279610	K562	blood:
7	chr22:33258265..33260703-chr22:33277216..33279656,2	K562	blood:

Variant related genes	Relation type
ENSG00000100150	Chromatin interaction
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1010432	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13054969	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13057857	0.83[AMR][1000 genomes]
rs2016169	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35640347	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs916396	0.80[ASN][1000 genomes]
rs9606997	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9606998	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9609647	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609649	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9609651	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609652	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9609653	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9609654	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9609655	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9609656	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9609657	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9609658	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33237400-33282200	Weak transcription	Fetal Brain Female	brain
2	chr22:33257800-33282000	Weak transcription	HepG2	liver
3	chr22:33265200-33282000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr22:33270800-33287200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr22:33274200-33286200	Enhancers	Fetal Heart	heart
7	chr22:33275000-33280200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr22:33275400-33279600	Enhancers	Primary hematopoietic stem cells	blood
9	chr22:33275400-33279600	Enhancers	Fetal Muscle Leg	muscle
10	chr22:33275400-33285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr22:33275800-33284000	Enhancers	Fetal Stomach	stomach
12	chr22:33276000-33279600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr22:33276200-33278200	Enhancers	Right Ventricle	heart
14	chr22:33276200-33278400	Enhancers	Placenta	Placenta
15	chr22:33276200-33279000	Enhancers	Fetal Muscle Trunk	muscle
16	chr22:33276200-33279400	Enhancers	Fetal Lung	lung
17	chr22:33276600-33278000	Enhancers	Thymus	Thymus
18	chr22:33276800-33278000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr22:33276800-33278400	Enhancers	Primary B cells from peripheral blood	blood
20	chr22:33276800-33278400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr22:33276800-33279200	Enhancers	Fetal Brain Male	brain
22	chr22:33277000-33278000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr22:33277000-33278000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr22:33277000-33284800	Weak transcription	Ovary	ovary
25	chr22:33277000-33302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr22:33277400-33278000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr22:33277400-33278000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr22:33277400-33278200	Active TSS	K562	blood
29	chr22:33277400-33278600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr22:33277600-33278400	Active TSS	Primary T cells from cord blood	blood
31	chr22:33277600-33278600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr22:33277600-33278600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr22:33277600-33278800	Weak transcription	Brain Germinal Matrix	brain
34	chr22:33277600-33279000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr22:33277600-33280000	Enhancers	Fetal Thymus	thymus
36	chr22:33277600-33282800	Weak transcription	Right Atrium	heart
37	chr22:33277600-33283800	Weak transcription	HSMMtube	muscle
38	chr22:33277600-33285000	Weak transcription	Left Ventricle	heart
39	chr22:33277800-33278000	Active TSS	Primary T helper naive cells fromperipheralblood	blood

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