Variant report

Variant	rs9609656
Chromosome Location	chr22:33316280-33316281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33300095..33301805-chr22:33313457..33316283,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1010432	0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13054969	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs13057857	0.83[MEX][hapmap]
rs137537	0.80[MEX][hapmap]
rs2016169	0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35640347	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs756550	0.88[CHD][hapmap];0.89[MEX][hapmap]
rs916396	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606997	0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9606998	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9609647	0.83[AMR][1000 genomes]
rs9609648	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9609649	0.81[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9609651	0.91[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9609652	0.91[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9609653	0.91[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609655	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609657	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609658	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609663	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9609678	0.86[CHB][hapmap]
rs9609680	0.85[CHB][hapmap]
rs9609681	0.82[CHB][hapmap]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33312800-33318400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr22:33313200-33318400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr22:33313400-33317800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr22:33313400-33319600	Enhancers	Fetal Lung	lung
5	chr22:33313600-33317000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr22:33314200-33316600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr22:33314200-33318600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr22:33314200-33323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr22:33314200-33332200	Weak transcription	HepG2	liver
11	chr22:33315000-33316400	Weak transcription	Fetal Muscle Leg	muscle
12	chr22:33315000-33316800	Weak transcription	Spleen	Spleen
13	chr22:33315200-33317000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr22:33315200-33318600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr22:33315600-33316400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr22:33315600-33316600	Weak transcription	Fetal Kidney	kidney
17	chr22:33315600-33317200	Enhancers	Fetal Stomach	stomach
18	chr22:33315600-33318400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr22:33315600-33328200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr22:33316000-33316600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr22:33316000-33316800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr22:33316000-33316800	Enhancers	Fetal Brain Male	brain
23	chr22:33316000-33316800	Enhancers	Placenta	Placenta
24	chr22:33316000-33316800	Enhancers	Ovary	ovary
25	chr22:33316000-33317000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr22:33316000-33317000	Enhancers	Adipose Nuclei	Adipose
27	chr22:33316000-33317000	Enhancers	Fetal Heart	heart
28	chr22:33316000-33317000	Enhancers	Left Ventricle	heart
29	chr22:33316000-33317000	Enhancers	Right Atrium	heart
30	chr22:33316000-33317200	Enhancers	Colon Smooth Muscle	Colon
31	chr22:33316000-33317200	Enhancers	Rectal Smooth Muscle	rectum
32	chr22:33316200-33316400	Enhancers	Brain Germinal Matrix	brain
33	chr22:33316200-33316800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr22:33316200-33316800	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr22:33316200-33317000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr22:33316200-33317000	Enhancers	Fetal Brain Female	brain
37	chr22:33316200-33317000	Enhancers	Right Ventricle	heart
38	chr22:33316200-33317000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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