Variant report

Variant	rs13054969
Chromosome Location	chr22:33323972-33323973
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33321825..33324446-chr22:33328460..33330049,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1010432	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs137554	0.84[ASN][1000 genomes]
rs2016169	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35640347	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs756550	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs916396	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9606997	0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9606998	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9609647	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9609648	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9609649	0.81[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs9609651	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9609652	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9609653	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9609654	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9609655	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609656	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[YRI][hapmap];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9609657	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609658	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9609663	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9609678	0.86[CHB][hapmap]
rs9609680	0.84[CHB][hapmap]
rs9609681	0.81[CHB][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33314200-33332200	Weak transcription	HepG2	liver
3	chr22:33315600-33328200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr22:33319200-33324800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr22:33319200-33333000	Weak transcription	Fetal Brain Male	brain
6	chr22:33319600-33325400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr22:33319600-33325600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr22:33319600-33326800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr22:33320600-33325400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr22:33320800-33325400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr22:33323800-33327600	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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