Variant report

Variant	rs9609654
Chromosome Location	chr22:33312820-33312821
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1010432	0.88[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13054969	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2016169	0.89[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35640347	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs916396	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9606997	0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9606998	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9609647	0.83[AMR][1000 genomes]
rs9609648	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9609649	0.87[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9609651	0.89[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9609652	0.89[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9609653	0.89[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9609655	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609657	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609658	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609663	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9609678	0.84[CHB][hapmap]
rs9609680	0.82[CHB][hapmap]
rs9609681	0.83[CHB][hapmap]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33308000-33313000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr22:33308200-33313600	Weak transcription	Fetal Brain Male	brain
3	chr22:33310000-33313200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr22:33311800-33313200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr22:33311800-33313400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr22:33312200-33313600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr22:33312200-33313800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr22:33312400-33313000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr22:33312400-33313400	Weak transcription	Brain Anterior Caudate	brain
10	chr22:33312400-33314200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr22:33312800-33313600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr22:33312800-33318400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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