Variant report

Variant	rs9609655
Chromosome Location	chr22:33315969-33315970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33300095..33301805-chr22:33313457..33316283,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1010432	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13054969	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs137554	0.84[ASN][1000 genomes]
rs2016169	0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2020103	0.81[AMR][1000 genomes]
rs35640347	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs756550	0.81[ASN][1000 genomes]
rs916396	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9606997	0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9606998	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9609647	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9609648	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9609649	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9609651	0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9609652	0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9609653	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9609654	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609656	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609658	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9609663	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33312800-33318400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr22:33313200-33318400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr22:33313400-33317800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr22:33313400-33319600	Enhancers	Fetal Lung	lung
5	chr22:33313600-33317000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr22:33314000-33316000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:33314000-33316000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr22:33314000-33316200	Weak transcription	Fetal Brain Female	brain
9	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr22:33314200-33316000	Weak transcription	Adipose Nuclei	Adipose
11	chr22:33314200-33316000	Weak transcription	Fetal Brain Male	brain
12	chr22:33314200-33316000	Weak transcription	Left Ventricle	heart
13	chr22:33314200-33316200	Weak transcription	Right Ventricle	heart
14	chr22:33314200-33316600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr22:33314200-33318600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr22:33314200-33323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr22:33314200-33332200	Weak transcription	HepG2	liver
18	chr22:33314400-33316000	Weak transcription	Fetal Heart	heart
19	chr22:33315000-33316000	Weak transcription	Placenta	Placenta
20	chr22:33315000-33316000	Weak transcription	Right Atrium	heart
21	chr22:33315000-33316400	Weak transcription	Fetal Muscle Leg	muscle
22	chr22:33315000-33316800	Weak transcription	Spleen	Spleen
23	chr22:33315200-33317000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr22:33315200-33318600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr22:33315600-33316000	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr22:33315600-33316400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr22:33315600-33316600	Weak transcription	Fetal Kidney	kidney
28	chr22:33315600-33317200	Enhancers	Fetal Stomach	stomach
29	chr22:33315600-33318400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr22:33315600-33328200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links