Variant report

Variant	rs10041410
Chromosome Location	chr5:79521757-79521758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79521252..79524016-chr5:79546932..79549730,2	MCF-7	breast:
2	chr5:79477910..79480218-chr5:79521000..79523147,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10036141	1.00[ASN][1000 genomes]
rs10036779	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058560	1.00[ASN][1000 genomes]
rs10068511	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12697906	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13170471	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs13178966	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13180605	0.93[CEU][hapmap];1.00[ASN][1000 genomes]
rs13186656	0.94[CEU][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13187742	1.00[ASN][1000 genomes]
rs13354808	0.83[CEU][hapmap]
rs13355153	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17200856	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs17201124	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs2405138	1.00[ASN][1000 genomes]
rs28637244	1.00[ASN][1000 genomes]
rs35696683	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4521455	1.00[ASN][1000 genomes]
rs56040222	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867389	1.00[ASN][1000 genomes]
rs6867803	1.00[ASN][1000 genomes]
rs6876065	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs6888220	1.00[ASN][1000 genomes]
rs71636208	1.00[ASN][1000 genomes]
rs72778006	1.00[ASN][1000 genomes]
rs72778028	1.00[ASN][1000 genomes]
rs9293805	0.82[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79500000-79537600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:79509600-79525600	Weak transcription	Spleen	Spleen
3	chr5:79509800-79535600	Weak transcription	Primary B cells from cord blood	blood
4	chr5:79512000-79534000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr5:79513600-79525400	Weak transcription	Adipose Nuclei	Adipose
6	chr5:79513800-79525200	Weak transcription	Osteobl	bone
7	chr5:79513800-79527800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr5:79514000-79524200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:79514200-79525600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:79515400-79525200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:79515400-79525800	Weak transcription	Esophagus	oesophagus
12	chr5:79515600-79525400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr5:79515600-79525400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:79515600-79525600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:79515600-79525600	Weak transcription	Ovary	ovary
16	chr5:79515600-79525600	Weak transcription	Right Atrium	heart
17	chr5:79515600-79534400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr5:79515800-79525400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:79515800-79527000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr5:79516600-79526400	Weak transcription	Small Intestine	intestine
21	chr5:79516800-79523000	Weak transcription	HepG2	liver
22	chr5:79516800-79524200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr5:79516800-79525200	Weak transcription	Fetal Lung	lung
24	chr5:79516800-79525600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:79516800-79525600	Weak transcription	Brain Angular Gyrus	brain
26	chr5:79516800-79525600	Weak transcription	Colonic Mucosa	Colon
27	chr5:79516800-79525600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr5:79516800-79534400	Weak transcription	Right Ventricle	heart
29	chr5:79517000-79521800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr5:79517000-79523200	Weak transcription	Left Ventricle	heart
31	chr5:79517000-79523400	Weak transcription	Fetal Intestine Large	intestine
32	chr5:79517000-79525400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr5:79517000-79525600	Weak transcription	Gastric	stomach
34	chr5:79517000-79525800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:79517000-79525800	Weak transcription	Placenta	Placenta
36	chr5:79517000-79525800	Weak transcription	Lung	lung
37	chr5:79517000-79526800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr5:79517000-79530000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr5:79517000-79532000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:79517000-79534200	Weak transcription	Fetal Stomach	stomach
41	chr5:79517000-79534800	Weak transcription	Dnd41	blood
42	chr5:79517000-79536400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr5:79517000-79536600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr5:79517200-79525800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr5:79517200-79533200	Weak transcription	Fetal Muscle Leg	muscle
46	chr5:79517400-79522800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr5:79517400-79525000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr5:79517400-79525400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr5:79517400-79525800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr5:79517800-79525400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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