The 2.0 version of rSNPBase

Variant report

Variant rs10058560
Chromosome Location chr5:79496685-79496686
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:79483800-79496800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr5:79483800-79498200 Weak transcription NHEK skin
3 chr5:79488200-79497200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr5:79488600-79497000 Weak transcription Colonic Mucosa Colon
5 chr5:79489000-79497000 Weak transcription Primary B cells from peripheral blood blood
6 chr5:79489000-79500800 Weak transcription Muscle Satellite Cultured Cells --
7 chr5:79489200-79500800 Weak transcription Primary neutrophils fromperipheralblood blood
8 chr5:79489400-79498200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr5:79489600-79497000 Weak transcription Gastric stomach
10 chr5:79489600-79498200 Weak transcription Aorta Aorta
11 chr5:79489600-79499600 Weak transcription NH-A brain
12 chr5:79489600-79500400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr5:79489800-79498000 Weak transcription HMEC breast
14 chr5:79489800-79500000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr5:79489800-79500800 Weak transcription HSMM muscle
16 chr5:79489800-79502000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr5:79490200-79498400 Weak transcription ES-WA7 Cell Line embryonic stem cell
18 chr5:79490200-79499600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
19 chr5:79490400-79498800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr5:79490800-79498200 Weak transcription Primary B cells from cord blood blood
21 chr5:79490800-79498200 Weak transcription Spleen Spleen
22 chr5:79490800-79499600 Weak transcription Fetal Brain Male brain
23 chr5:79490800-79500200 Weak transcription Small Intestine intestine
24 chr5:79490800-79500800 Weak transcription HSMMtube muscle
25 chr5:79490800-79513800 Weak transcription Fetal Kidney kidney
26 chr5:79491600-79496800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
27 chr5:79491600-79500400 Strong transcription Monocytes-CD14+_RO01746 blood
28 chr5:79491800-79500800 Genic enhancers Primary T helper naive cells fromperipheralblood blood
29 chr5:79491800-79501000 Genic enhancers Primary T cells fromperipheralblood blood
30 chr5:79492000-79499600 Strong transcription Fetal Intestine Small intestine
31 chr5:79492000-79500000 Strong transcription Fetal Stomach stomach
32 chr5:79492000-79500200 Genic enhancers Primary T helper cells fromperipheralblood blood
33 chr5:79492000-79504200 Weak transcription Colon Smooth Muscle Colon
34 chr5:79492200-79497400 Genic enhancers Primary T cells from cord blood blood
35 chr5:79492200-79497400 Weak transcription Rectal Smooth Muscle rectum
36 chr5:79492200-79498400 Strong transcription Liver Liver
37 chr5:79492200-79498800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr5:79492200-79499000 Strong transcription Thymus Thymus
39 chr5:79492200-79500200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr5:79492200-79500400 Strong transcription iPS-20b Cell Line embryonic stem cell
41 chr5:79492200-79501800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr5:79492200-79506200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr5:79492400-79500400 Strong transcription HUES64 Cell Line embryonic stem cell
44 chr5:79492800-79497000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
45 chr5:79493200-79499800 Strong transcription Sigmoid Colon Sigmoid Colon
46 chr5:79493400-79501000 Strong transcription ES-I3 Cell Line embryonic stem cell
47 chr5:79493400-79501000 Strong transcription Dnd41 blood
48 chr5:79494000-79499600 Strong transcription Fetal Intestine Large intestine
49 chr5:79494200-79497000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr5:79494200-79499000 Strong transcription HUES48 Cell Line embryonic stem cell

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015