Variant report

Variant	rs17201124
Chromosome Location	chr5:79543188-79543189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79535906..79537585-chr5:79542689..79544466,2	MCF-7	breast:
2	chr5:79539657..79541477-chr5:79541772..79543321,2	MCF-7	breast:
3	chr5:79476714..79480017-chr5:79541868..79545236,4	MCF-7	breast:
4	chr5:79525784..79527475-chr5:79541554..79543864,2	MCF-7	breast:
5	chr5:79530902..79533522-chr5:79541942..79546147,3	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10036141	1.00[ASN][1000 genomes]
rs10036779	1.00[ASN][1000 genomes]
rs10041410	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs10058560	1.00[ASN][1000 genomes]
rs10068511	0.88[CEU][hapmap];1.00[ASN][1000 genomes]
rs12697906	1.00[ASN][1000 genomes]
rs13170471	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178966	1.00[ASN][1000 genomes]
rs13180605	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186656	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13187742	1.00[ASN][1000 genomes]
rs13355153	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs17200856	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2405138	1.00[ASN][1000 genomes]
rs28637244	1.00[ASN][1000 genomes]
rs35696683	1.00[ASN][1000 genomes]
rs4521455	1.00[ASN][1000 genomes]
rs56040222	1.00[ASN][1000 genomes]
rs6867389	1.00[ASN][1000 genomes]
rs6867803	1.00[ASN][1000 genomes]
rs6876065	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888220	1.00[ASN][1000 genomes]
rs71636208	1.00[ASN][1000 genomes]
rs72778006	1.00[ASN][1000 genomes]
rs72778028	1.00[ASN][1000 genomes]
rs9293805	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79535800-79543200	Weak transcription	Gastric	stomach
2	chr5:79535800-79543400	Weak transcription	Small Intestine	intestine
3	chr5:79536000-79543200	Weak transcription	Psoas Muscle	Psoas
4	chr5:79539400-79543200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:79540200-79543200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:79540600-79543600	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:79540600-79544000	Enhancers	Fetal Muscle Leg	muscle
8	chr5:79540800-79543600	Enhancers	Fetal Kidney	kidney
9	chr5:79540800-79543600	Enhancers	Fetal Stomach	stomach
10	chr5:79540800-79544600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:79540800-79544600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:79540800-79544600	Enhancers	Brain Angular Gyrus	brain
13	chr5:79540800-79544600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:79540800-79544600	Enhancers	Stomach Mucosa	stomach
15	chr5:79540800-79548000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr5:79541000-79544600	Enhancers	Brain Hippocampus Middle	brain
17	chr5:79541000-79544800	Enhancers	Brain Cingulate Gyrus	brain
18	chr5:79541000-79544800	Enhancers	Brain Substantia Nigra	brain
19	chr5:79541200-79543600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:79541200-79543800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr5:79541200-79544200	Enhancers	Adipose Nuclei	Adipose
22	chr5:79541200-79548600	Enhancers	Liver	Liver
23	chr5:79541400-79543200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr5:79541400-79543200	Weak transcription	Esophagus	oesophagus
25	chr5:79541400-79543200	Weak transcription	Lung	lung
26	chr5:79541400-79543200	Weak transcription	Pancreas	Pancrea
27	chr5:79541400-79543400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:79541400-79543400	Weak transcription	Left Ventricle	heart
29	chr5:79541400-79544600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr5:79541400-79545800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:79541600-79543200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr5:79541600-79544600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:79541600-79544600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:79541800-79543200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:79541800-79543200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr5:79541800-79543200	Weak transcription	Ovary	ovary
37	chr5:79541800-79543400	Enhancers	Thymus	Thymus
38	chr5:79541800-79543600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:79541800-79543600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr5:79541800-79543600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:79541800-79543600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:79541800-79543600	Enhancers	Brain Anterior Caudate	brain
43	chr5:79541800-79543800	Enhancers	Stomach Smooth Muscle	stomach
44	chr5:79541800-79544000	Enhancers	Dnd41	blood
45	chr5:79541800-79544200	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr5:79541800-79544200	Enhancers	Fetal Heart	heart
47	chr5:79541800-79544600	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr5:79542000-79543200	Flanking Active TSS	NH-A	brain
49	chr5:79542000-79543600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr5:79542000-79543600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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