The 2.0 version of rSNPBase

Variant report

Variant rs56040222
Chromosome Location chr5:79508013-79508014
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:79490800-79513800 Weak transcription Fetal Kidney kidney
2 chr5:79497000-79508800 Enhancers Brain Substantia Nigra brain
3 chr5:79497400-79515000 Weak transcription Esophagus oesophagus
4 chr5:79497800-79508400 Weak transcription Primary B cells from peripheral blood blood
5 chr5:79498600-79520800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
6 chr5:79498600-79521200 Weak transcription Placenta Amnion Placenta Amnion
7 chr5:79498800-79509800 Enhancers Brain Hippocampus Middle brain
8 chr5:79498800-79514000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
9 chr5:79499000-79509200 Weak transcription Spleen Spleen
10 chr5:79499000-79513200 Weak transcription Rectal Smooth Muscle rectum
11 chr5:79499000-79517800 Weak transcription Aorta Aorta
12 chr5:79500000-79509200 Weak transcription Fetal Muscle Leg muscle
13 chr5:79500000-79509400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr5:79500000-79537600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
15 chr5:79500200-79512000 Weak transcription Fetal Muscle Trunk muscle
16 chr5:79500400-79508200 Weak transcription Monocytes-CD14+_RO01746 blood
17 chr5:79500400-79510400 Enhancers Primary T killer memory cells from peripheral blood blood
18 chr5:79501000-79509200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr5:79501000-79510600 Enhancers Primary T cells fromperipheralblood blood
20 chr5:79501000-79512000 Enhancers Primary T killer naive cells fromperipheralblood blood
21 chr5:79501000-79513200 Weak transcription Stomach Smooth Muscle stomach
22 chr5:79501200-79508400 Enhancers Brain Cingulate Gyrus brain
23 chr5:79501400-79509200 Weak transcription Primary B cells from cord blood blood
24 chr5:79501400-79509200 Weak transcription Right Atrium heart
25 chr5:79501400-79509400 Weak transcription NHEK skin
26 chr5:79501400-79515000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr5:79501600-79513200 Weak transcription H1 Cell Line embryonic stem cell
28 chr5:79501600-79516800 Weak transcription ES-WA7 Cell Line embryonic stem cell
29 chr5:79502000-79516200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr5:79502400-79513200 Weak transcription Fetal Lung lung
31 chr5:79502600-79509200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr5:79502600-79515200 Weak transcription HSMMtube muscle
33 chr5:79502800-79509200 Weak transcription Fetal Adrenal Gland Adrenal Gland
34 chr5:79502800-79511400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr5:79502800-79513200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr5:79503200-79510800 Weak transcription Placenta Placenta
37 chr5:79503600-79513000 Weak transcription Osteobl bone
38 chr5:79504000-79513000 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr5:79504200-79508600 Weak transcription Primary T regulatory cells fromperipheralblood blood
40 chr5:79504200-79509200 Weak transcription Ovary ovary
41 chr5:79504200-79509400 Enhancers Fetal Heart heart
42 chr5:79504600-79512000 Weak transcription Colon Smooth Muscle Colon
43 chr5:79504800-79508400 Weak transcription Adipose Nuclei Adipose
44 chr5:79505000-79509200 Weak transcription Psoas Muscle Psoas
45 chr5:79505200-79509600 Enhancers Thymus Thymus
46 chr5:79505200-79513000 Weak transcription Fetal Brain Male brain
47 chr5:79505800-79512200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
48 chr5:79505800-79513200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
49 chr5:79506400-79509200 Weak transcription HMEC breast
50 chr5:79506400-79509400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015