Variant report

Variant	rs6876065
Chromosome Location	chr5:79530876-79530877
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79528152..79532318-chr5:79552098..79554720,3	MCF-7	breast:
2	chr5:79529349..79531030-chr5:79552067..79554937,3	K562	blood:
3	chr5:79524008..79526229-chr5:79530708..79532211,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10036141	1.00[ASN][1000 genomes]
rs10036779	1.00[ASN][1000 genomes]
rs10041410	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs10058560	1.00[ASN][1000 genomes]
rs10068511	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs12697906	1.00[ASN][1000 genomes]
rs13170471	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178966	1.00[ASN][1000 genomes]
rs13180605	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186656	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13187742	1.00[ASN][1000 genomes]
rs13355153	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs17200856	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17201124	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2405138	1.00[ASN][1000 genomes]
rs28637244	1.00[ASN][1000 genomes]
rs35696683	1.00[ASN][1000 genomes]
rs4521455	1.00[ASN][1000 genomes]
rs56040222	1.00[ASN][1000 genomes]
rs6867389	1.00[ASN][1000 genomes]
rs6867803	1.00[ASN][1000 genomes]
rs6888220	1.00[ASN][1000 genomes]
rs71636208	1.00[ASN][1000 genomes]
rs72778006	1.00[ASN][1000 genomes]
rs72778028	1.00[ASN][1000 genomes]
rs9293805	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79500000-79537600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:79509800-79535600	Weak transcription	Primary B cells from cord blood	blood
3	chr5:79512000-79534000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:79515600-79534400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:79516800-79534400	Weak transcription	Right Ventricle	heart
6	chr5:79517000-79532000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:79517000-79534200	Weak transcription	Fetal Stomach	stomach
8	chr5:79517000-79534800	Weak transcription	Dnd41	blood
9	chr5:79517000-79536400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:79517000-79536600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:79517200-79533200	Weak transcription	Fetal Muscle Leg	muscle
12	chr5:79520400-79531000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr5:79521200-79532600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:79521400-79536200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr5:79521600-79534200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr5:79525800-79534200	Weak transcription	Fetal Kidney	kidney
17	chr5:79525800-79535400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr5:79526000-79534000	Weak transcription	Fetal Thymus	thymus
19	chr5:79526000-79534200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:79526000-79534200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr5:79526000-79534400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:79526000-79534800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:79526200-79534200	Weak transcription	Psoas Muscle	Psoas
24	chr5:79526200-79534400	Weak transcription	Left Ventricle	heart
25	chr5:79526200-79534600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr5:79526200-79534600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:79526600-79532800	Weak transcription	Lung	lung
28	chr5:79526600-79534200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:79526600-79534400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:79526800-79533200	Weak transcription	Stomach Mucosa	stomach
31	chr5:79526800-79534000	Weak transcription	Ovary	ovary
32	chr5:79526800-79534400	Weak transcription	Pancreas	Pancrea
33	chr5:79527000-79534400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr5:79527200-79533400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr5:79527400-79534000	Weak transcription	Fetal Intestine Large	intestine
36	chr5:79527600-79533000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr5:79527800-79532800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr5:79527800-79533000	Weak transcription	Brain Hippocampus Middle	brain
39	chr5:79527800-79533200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr5:79527800-79534600	Weak transcription	Small Intestine	intestine
41	chr5:79527800-79538600	Weak transcription	HepG2	liver
42	chr5:79528000-79534400	Weak transcription	Fetal Intestine Small	intestine
43	chr5:79529400-79531000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr5:79529800-79531200	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr5:79530000-79531400	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr5:79530000-79532400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr5:79530000-79532800	Enhancers	Primary T cells from cord blood	blood
48	chr5:79530200-79533400	Weak transcription	Brain Angular Gyrus	brain
49	chr5:79530400-79531000	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr5:79530400-79533400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links