Variant report
| Variant | rs4521455 |
|---|---|
| Chromosome Location | chr5:79576956-79576957 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10036141 | 1.00[ASN][1000 genomes] |
| rs10036779 | 1.00[ASN][1000 genomes] |
| rs10041410 | 1.00[ASN][1000 genomes] |
| rs10058560 | 1.00[ASN][1000 genomes] |
| rs10068511 | 1.00[ASN][1000 genomes] |
| rs12697906 | 1.00[ASN][1000 genomes] |
| rs13170471 | 1.00[ASN][1000 genomes] |
| rs13178966 | 1.00[ASN][1000 genomes] |
| rs13180605 | 1.00[ASN][1000 genomes] |
| rs13186656 | 1.00[ASN][1000 genomes] |
| rs13187742 | 1.00[ASN][1000 genomes] |
| rs13355153 | 1.00[ASN][1000 genomes] |
| rs17200856 | 1.00[ASN][1000 genomes] |
| rs17201124 | 1.00[ASN][1000 genomes] |
| rs2173676 | 0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2216548 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2405138 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28637244 | 1.00[ASN][1000 genomes] |
| rs35696683 | 1.00[ASN][1000 genomes] |
| rs56040222 | 1.00[ASN][1000 genomes] |
| rs6867389 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6867803 | 1.00[ASN][1000 genomes] |
| rs6876065 | 1.00[ASN][1000 genomes] |
| rs6888220 | 1.00[ASN][1000 genomes] |
| rs71636208 | 1.00[ASN][1000 genomes] |
| rs72778006 | 1.00[ASN][1000 genomes] |
| rs72778028 | 1.00[ASN][1000 genomes] |
| rs9293805 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432748 | chr5:79300434-79577760 | Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:79553400-79577800 | Weak transcription | Right Atrium | heart |
| 2 | chr5:79567800-79580400 | Weak transcription | Primary T helper cells fromperipheralblood | blood |
