Variant report

Variant	rs35696683
Chromosome Location	chr5:79500805-79500806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79486187..79489980-chr5:79497406..79500958,4	K562	blood:
2	chr5:79493019..79494744-chr5:79499346..79502038,2	MCF-7	breast:
3	chr5:79494988..79497177-chr5:79500013..79503838,4	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10036141	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10036779	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041410	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10058560	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068511	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12697906	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13170471	1.00[ASN][1000 genomes]
rs13178966	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180605	1.00[ASN][1000 genomes]
rs13186656	1.00[ASN][1000 genomes]
rs13187742	1.00[ASN][1000 genomes]
rs13354808	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13355153	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17200856	1.00[ASN][1000 genomes]
rs17201124	1.00[ASN][1000 genomes]
rs2405138	1.00[ASN][1000 genomes]
rs28637244	1.00[ASN][1000 genomes]
rs4521455	1.00[ASN][1000 genomes]
rs56040222	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867389	1.00[ASN][1000 genomes]
rs6867803	1.00[ASN][1000 genomes]
rs6876065	1.00[ASN][1000 genomes]
rs6888220	1.00[ASN][1000 genomes]
rs71636208	1.00[ASN][1000 genomes]
rs72778006	1.00[ASN][1000 genomes]
rs72778028	1.00[ASN][1000 genomes]
rs9293805	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79489800-79502000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:79490800-79513800	Weak transcription	Fetal Kidney	kidney
3	chr5:79491800-79501000	Genic enhancers	Primary T cells fromperipheralblood	blood
4	chr5:79492000-79504200	Weak transcription	Colon Smooth Muscle	Colon
5	chr5:79492200-79501800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:79492200-79506200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:79493400-79501000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:79493400-79501000	Strong transcription	Dnd41	blood
9	chr5:79495200-79507800	Weak transcription	Right Ventricle	heart
10	chr5:79495600-79503600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:79496800-79501000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:79497000-79506800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:79497000-79508800	Enhancers	Brain Substantia Nigra	brain
14	chr5:79497200-79505400	Enhancers	Brain Angular Gyrus	brain
15	chr5:79497400-79501400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:79497400-79515000	Weak transcription	Esophagus	oesophagus
17	chr5:79497800-79503600	Weak transcription	Fetal Brain Female	brain
18	chr5:79497800-79508400	Weak transcription	Primary B cells from peripheral blood	blood
19	chr5:79498200-79501400	Strong transcription	NHEK	skin
20	chr5:79498600-79501200	Genic enhancers	Primary T cells from cord blood	blood
21	chr5:79498600-79501800	Weak transcription	HMEC	breast
22	chr5:79498600-79520800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:79498600-79521200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr5:79498800-79501400	Genic enhancers	Fetal Thymus	thymus
25	chr5:79498800-79501800	Enhancers	Pancreas	Pancrea
26	chr5:79498800-79502000	Weak transcription	Adipose Nuclei	Adipose
27	chr5:79498800-79503200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr5:79498800-79504000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr5:79498800-79509800	Enhancers	Brain Hippocampus Middle	brain
30	chr5:79498800-79514000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr5:79499000-79501000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr5:79499000-79501000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr5:79499000-79502000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr5:79499000-79502200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:79499000-79503800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr5:79499000-79506600	Weak transcription	Lung	lung
37	chr5:79499000-79507800	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr5:79499000-79509200	Weak transcription	Spleen	Spleen
39	chr5:79499000-79513200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr5:79499000-79517800	Weak transcription	Aorta	Aorta
41	chr5:79499200-79502200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:79499400-79502800	Enhancers	Primary hematopoietic stem cells	blood
43	chr5:79499400-79507000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr5:79499600-79501400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr5:79499600-79502800	Enhancers	NH-A	brain
46	chr5:79499600-79503600	Enhancers	Osteobl	bone
47	chr5:79499800-79501000	Enhancers	Left Ventricle	heart
48	chr5:79499800-79501000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
49	chr5:79499800-79501600	Enhancers	Stomach Mucosa	stomach
50	chr5:79499800-79501800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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