Variant report
| Variant | rs72778028 |
|---|---|
| Chromosome Location | chr5:79589770-79589771 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10036141 | 1.00[ASN][1000 genomes] |
| rs10036779 | 1.00[ASN][1000 genomes] |
| rs10041410 | 1.00[ASN][1000 genomes] |
| rs10058560 | 1.00[ASN][1000 genomes] |
| rs10068511 | 1.00[ASN][1000 genomes] |
| rs12697906 | 1.00[ASN][1000 genomes] |
| rs13170471 | 1.00[ASN][1000 genomes] |
| rs13178966 | 1.00[ASN][1000 genomes] |
| rs13180605 | 1.00[ASN][1000 genomes] |
| rs13186656 | 1.00[ASN][1000 genomes] |
| rs13187742 | 1.00[ASN][1000 genomes] |
| rs13355153 | 1.00[ASN][1000 genomes] |
| rs17200856 | 1.00[ASN][1000 genomes] |
| rs17201124 | 1.00[ASN][1000 genomes] |
| rs2405138 | 1.00[ASN][1000 genomes] |
| rs28637244 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35696683 | 1.00[ASN][1000 genomes] |
| rs4521455 | 1.00[ASN][1000 genomes] |
| rs56040222 | 1.00[ASN][1000 genomes] |
| rs6867389 | 1.00[ASN][1000 genomes] |
| rs6867803 | 1.00[ASN][1000 genomes] |
| rs6876065 | 1.00[ASN][1000 genomes] |
| rs6888220 | 1.00[ASN][1000 genomes] |
| rs71636208 | 1.00[ASN][1000 genomes] |
| rs72778006 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9293805 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948807 | chr5:79549207-79805765 | Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv518480 | chr5:79586085-79748382 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:79580600-79595400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
