Variant report

Variant	rs10047310
Chromosome Location	chr10:98269475-98269476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98265429..98267802-chr10:98268525..98270861,2	K562	blood:
2	chr10:98267259..98269511-chr10:98271811..98273644,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11188816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240642	0.87[AFR][1000 genomes]
rs12242731	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242967	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249844	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255771	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256621	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262056	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264651	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269502	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56358959	1.00[EUR][1000 genomes]
rs58757826	1.00[EUR][1000 genomes]
rs7069486	1.00[EUR][1000 genomes]
rs7093362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs730443	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320778	1.00[EUR][1000 genomes]
rs73324568	1.00[EUR][1000 genomes]
rs73324586	1.00[EUR][1000 genomes]
rs73326403	1.00[EUR][1000 genomes]
rs73326427	1.00[EUR][1000 genomes]
rs7896485	1.00[EUR][1000 genomes]
rs7896621	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7901357	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902934	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907262	1.00[EUR][1000 genomes]
rs7910630	1.00[EUR][1000 genomes]
rs7911463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918075	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98266400-98272200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:98267000-98272200	Weak transcription	Pancreas	Pancrea
3	chr10:98267600-98272000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98267800-98271400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:98268000-98270400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
6	chr10:98268200-98270000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr10:98268400-98270000	Enhancers	NH-A	brain
8	chr10:98268400-98270800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr10:98268400-98272400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:98268600-98269600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:98268600-98269600	Enhancers	HSMM	muscle
12	chr10:98268600-98269800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:98268600-98270000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:98268600-98271400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:98268800-98269600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:98268800-98270000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:98268800-98271400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr10:98269400-98270600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:98269400-98271000	Weak transcription	Left Ventricle	heart
20	chr10:98269400-98271000	Weak transcription	HSMMtube	muscle
21	chr10:98269400-98271000	Weak transcription	NHEK	skin
22	chr10:98269400-98271800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:98269400-98272400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:98269400-98272400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links