Variant report

Variant	rs12263129
Chromosome Location	chr10:98281692-98281693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98281257..98283776-chr10:98286224..98287742,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10047310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188816	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240642	0.87[AFR][1000 genomes]
rs12242731	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242967	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249844	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255771	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256621	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262056	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264651	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269502	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56358959	1.00[EUR][1000 genomes]
rs58757826	1.00[EUR][1000 genomes]
rs7069486	1.00[EUR][1000 genomes]
rs7093362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs730443	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320778	1.00[EUR][1000 genomes]
rs73324568	1.00[EUR][1000 genomes]
rs73324586	1.00[EUR][1000 genomes]
rs73326403	1.00[EUR][1000 genomes]
rs73326427	1.00[EUR][1000 genomes]
rs7896485	1.00[EUR][1000 genomes]
rs7896621	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7901357	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902934	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907262	1.00[EUR][1000 genomes]
rs7910630	1.00[EUR][1000 genomes]
rs7911463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918075	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274000-98282800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:98274000-98285800	Weak transcription	Aorta	Aorta
3	chr10:98274200-98284600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:98274200-98285400	Weak transcription	Colonic Mucosa	Colon
5	chr10:98274200-98285600	Weak transcription	Gastric	stomach
6	chr10:98274200-98285600	Weak transcription	Left Ventricle	heart
7	chr10:98274200-98285600	Weak transcription	Lung	lung
8	chr10:98274200-98285600	Weak transcription	Ovary	ovary
9	chr10:98274200-98285600	Weak transcription	Right Ventricle	heart
10	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
14	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:98274400-98285000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:98274400-98285000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:98274400-98285000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:98274400-98285600	Weak transcription	Brain Angular Gyrus	brain
19	chr10:98274400-98285600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:98274400-98285600	Weak transcription	Spleen	Spleen
21	chr10:98274400-98285800	Weak transcription	Brain Substantia Nigra	brain
22	chr10:98274400-98286000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:98274400-98287200	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:98274400-98287200	Weak transcription	K562	blood
25	chr10:98274400-98288400	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:98274600-98283400	Weak transcription	Fetal Heart	heart
28	chr10:98275000-98285000	Weak transcription	HSMMtube	muscle
29	chr10:98275200-98285600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr10:98275200-98306600	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr10:98275400-98289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:98275600-98292400	Weak transcription	Stomach Mucosa	stomach
33	chr10:98276200-98285200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr10:98276400-98283400	Strong transcription	HSMM	muscle
35	chr10:98276400-98285600	Weak transcription	Esophagus	oesophagus
36	chr10:98276400-98289600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:98276400-98301600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr10:98276600-98285000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:98276800-98283000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr10:98276800-98285400	Weak transcription	Thymus	Thymus
43	chr10:98277200-98285600	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr10:98277200-98286000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr10:98277200-98295200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:98277400-98285400	Weak transcription	Psoas Muscle	Psoas
47	chr10:98277400-98293400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:98277400-98315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:98277600-98283400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:98277600-98283600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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