Variant report

Variant	rs73326427
Chromosome Location	chr10:98202023-98202024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98195304..98197453-chr10:98200808..98203342,2	K562	blood:
2	chr10:98178038..98179737-chr10:98202020..98203646,2	MCF-7	breast:
3	chr10:98189391..98191766-chr10:98198833..98202422,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10047310	1.00[EUR][1000 genomes]
rs11188816	1.00[EUR][1000 genomes]
rs12242731	1.00[EUR][1000 genomes]
rs12242967	1.00[EUR][1000 genomes]
rs12245836	1.00[EUR][1000 genomes]
rs12248288	1.00[EUR][1000 genomes]
rs12249844	1.00[EUR][1000 genomes]
rs12255771	1.00[EUR][1000 genomes]
rs12256621	1.00[EUR][1000 genomes]
rs12262056	1.00[EUR][1000 genomes]
rs12263129	1.00[EUR][1000 genomes]
rs12269502	1.00[EUR][1000 genomes]
rs1902709	1.00[EUR][1000 genomes]
rs56358959	1.00[EUR][1000 genomes]
rs58757826	1.00[EUR][1000 genomes]
rs7069486	1.00[EUR][1000 genomes]
rs7074656	1.00[AMR][1000 genomes]
rs7085521	1.00[EUR][1000 genomes]
rs7093362	1.00[EUR][1000 genomes]
rs730443	1.00[EUR][1000 genomes]
rs73316899	1.00[EUR][1000 genomes]
rs73316902	1.00[EUR][1000 genomes]
rs73318839	1.00[EUR][1000 genomes]
rs73320778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326403	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7896485	1.00[EUR][1000 genomes]
rs7896621	1.00[EUR][1000 genomes]
rs7901357	1.00[EUR][1000 genomes]
rs7902934	1.00[EUR][1000 genomes]
rs7907262	1.00[EUR][1000 genomes]
rs7910630	1.00[EUR][1000 genomes]
rs7911463	1.00[EUR][1000 genomes]
rs7916172	1.00[EUR][1000 genomes]
rs7922911	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98199200-98202200	Enhancers	Adipose Nuclei	Adipose
2	chr10:98199800-98202600	Enhancers	Fetal Muscle Leg	muscle
3	chr10:98200000-98202600	Enhancers	Fetal Lung	lung
4	chr10:98200200-98202600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:98200400-98202200	Enhancers	Duodenum Smooth Muscle	Duodenum
6	chr10:98200400-98202400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:98200400-98202600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:98200600-98202400	Enhancers	Placenta	Placenta
9	chr10:98200600-98202600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr10:98200600-98202600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:98200800-98202200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:98200800-98202200	Enhancers	Left Ventricle	heart
13	chr10:98200800-98202400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr10:98200800-98202400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:98200800-98202400	Enhancers	Spleen	Spleen
16	chr10:98201000-98202400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:98201000-98202400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr10:98201000-98202600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:98201000-98205800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:98201200-98202400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:98201200-98202600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:98201200-98202600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:98201200-98202600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:98201200-98203000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr10:98201400-98202200	Enhancers	Lung	lung
26	chr10:98201400-98205000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:98201800-98202400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
28	chr10:98201800-98202400	Enhancers	Right Ventricle	heart
29	chr10:98201800-98202600	Bivalent Enhancer	Fetal Stomach	stomach
30	chr10:98201800-98206800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr10:98202000-98208000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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