Variant report

Variant	rs73320778
Chromosome Location	chr10:98099964-98099965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97776713..97777777-chr10:98099654..98100263,3	K562	blood:
2	chr10:97988986..97990030-chr10:98099646..98100689,10	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10047310	1.00[EUR][1000 genomes]
rs11188816	1.00[EUR][1000 genomes]
rs12255771	1.00[EUR][1000 genomes]
rs12262056	1.00[EUR][1000 genomes]
rs12263129	1.00[EUR][1000 genomes]
rs12269502	1.00[EUR][1000 genomes]
rs1902709	1.00[EUR][1000 genomes]
rs58757826	1.00[EUR][1000 genomes]
rs7074656	1.00[AMR][1000 genomes]
rs7085521	1.00[EUR][1000 genomes]
rs7093362	1.00[EUR][1000 genomes]
rs73316899	1.00[EUR][1000 genomes]
rs73316902	1.00[EUR][1000 genomes]
rs73318839	1.00[EUR][1000 genomes]
rs73320968	1.00[EUR][1000 genomes]
rs73324568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73326427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7896621	1.00[EUR][1000 genomes]
rs7901357	1.00[EUR][1000 genomes]
rs7902934	1.00[EUR][1000 genomes]
rs7911463	1.00[EUR][1000 genomes]
rs7916172	1.00[EUR][1000 genomes]
rs7922911	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98095200-98101200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:98098000-98101600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:98098400-98101600	Enhancers	Brain Hippocampus Middle	brain
4	chr10:98098400-98101600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr10:98098600-98100200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:98098600-98101200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:98098800-98100800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:98098800-98101200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:98099000-98100400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:98099000-98100800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:98099000-98100800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:98099000-98101200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:98099000-98101200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:98099200-98101600	Enhancers	Brain Substantia Nigra	brain
15	chr10:98099400-98100200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:98099400-98100800	Weak transcription	Thymus	Thymus
17	chr10:98099600-98101000	Weak transcription	Brain Anterior Caudate	brain
18	chr10:98099600-98102000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:98099800-98100000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:98099800-98100000	Enhancers	Fetal Thymus	thymus
21	chr10:98099800-98100200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:98099800-98100200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:98099800-98100200	Enhancers	Dnd41	blood
24	chr10:98099800-98100800	Weak transcription	Brain Angular Gyrus	brain
25	chr10:98099800-98101400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr10:98099800-98101600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr10:98099800-98101800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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