Variant report

Variant	rs12269502
Chromosome Location	chr10:98293782-98293783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10047310	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188816	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1172465	1.00[EUR][1000 genomes]
rs12240642	0.96[AFR][1000 genomes]
rs12242731	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245836	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263129	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264651	1.00[AMR][1000 genomes]
rs56358959	1.00[EUR][1000 genomes]
rs58757826	1.00[EUR][1000 genomes]
rs7069486	1.00[EUR][1000 genomes]
rs7093362	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs730443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320778	1.00[EUR][1000 genomes]
rs73324568	1.00[EUR][1000 genomes]
rs73324586	1.00[EUR][1000 genomes]
rs73326403	1.00[EUR][1000 genomes]
rs73326427	1.00[EUR][1000 genomes]
rs7895789	1.00[EUR][1000 genomes]
rs7896485	1.00[EUR][1000 genomes]
rs7896621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7901357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907262	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7910630	1.00[EUR][1000 genomes]
rs7911463	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916172	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
5	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:98275200-98306600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:98276400-98301600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:98277200-98295200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:98277400-98315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:98277800-98295800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:98278000-98295200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:98278400-98295200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr10:98278600-98318800	Weak transcription	Small Intestine	intestine
18	chr10:98280400-98295400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:98280400-98295800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:98282400-98294000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:98283200-98300600	Weak transcription	Fetal Stomach	stomach
22	chr10:98283400-98300600	Weak transcription	Fetal Intestine Small	intestine
23	chr10:98284200-98294200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr10:98284400-98294000	Strong transcription	Fetal Intestine Large	intestine
25	chr10:98284400-98295000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr10:98284600-98293800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr10:98285000-98295000	Strong transcription	NH-A	brain
28	chr10:98285000-98295600	Strong transcription	HSMM	muscle
29	chr10:98286200-98323000	Weak transcription	Lung	lung
30	chr10:98286600-98300800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:98286600-98306400	Weak transcription	Brain Substantia Nigra	brain
32	chr10:98286600-98306400	Weak transcription	Right Ventricle	heart
33	chr10:98286600-98306800	Weak transcription	Fetal Brain Male	brain
34	chr10:98286600-98338400	Weak transcription	Aorta	Aorta
35	chr10:98286600-98339400	Weak transcription	Brain Angular Gyrus	brain
36	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
37	chr10:98287000-98303400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:98288000-98298600	Weak transcription	Fetal Kidney	kidney
39	chr10:98288000-98302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:98288000-98305600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr10:98289400-98301200	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:98289400-98318600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:98289600-98299200	Weak transcription	NHLF	lung
44	chr10:98289800-98300600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:98290000-98301400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr10:98290000-98301400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:98290000-98302800	Weak transcription	Left Ventricle	heart
48	chr10:98290000-98303400	Weak transcription	Brain Hippocampus Middle	brain
49	chr10:98290000-98305600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr10:98290000-98310000	Weak transcription	Fetal Brain Female	brain

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