Variant report

Variant	rs11188816
Chromosome Location	chr10:98289002-98289003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10047310	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1172465	1.00[EUR][1000 genomes]
rs12240642	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs12242731	0.86[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242967	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245836	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248288	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249844	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255771	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256621	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262056	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263129	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264651	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269502	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56358959	1.00[EUR][1000 genomes]
rs58757826	1.00[EUR][1000 genomes]
rs7069486	1.00[EUR][1000 genomes]
rs7093362	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs730443	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320778	1.00[EUR][1000 genomes]
rs73324568	1.00[EUR][1000 genomes]
rs73324586	1.00[EUR][1000 genomes]
rs73326403	1.00[EUR][1000 genomes]
rs73326427	1.00[EUR][1000 genomes]
rs7896485	0.87[LWK][hapmap];1.00[EUR][1000 genomes]
rs7896621	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7901357	0.86[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902934	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907262	1.00[EUR][1000 genomes]
rs7910630	1.00[EUR][1000 genomes]
rs7911463	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916172	1.00[ASW][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918075	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
5	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:98275200-98306600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:98275400-98289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:98275600-98292400	Weak transcription	Stomach Mucosa	stomach
10	chr10:98276400-98289600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:98276400-98301600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:98277200-98295200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:98277400-98293400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:98277400-98315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:98277800-98289200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr10:98277800-98293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:98277800-98295800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:98278000-98293200	Strong transcription	Liver	Liver
22	chr10:98278000-98293400	Strong transcription	Duodenum Mucosa	Duodenum
23	chr10:98278000-98295200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:98278400-98295200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr10:98278600-98318800	Weak transcription	Small Intestine	intestine
26	chr10:98279000-98292200	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr10:98279000-98293000	Strong transcription	Dnd41	blood
28	chr10:98279200-98291400	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:98280400-98291600	Strong transcription	Primary B cells from cord blood	blood
30	chr10:98280400-98291600	Strong transcription	HUVEC	blood vessel
31	chr10:98280400-98295400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:98280400-98295800	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr10:98282400-98294000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:98283200-98300600	Weak transcription	Fetal Stomach	stomach
35	chr10:98283400-98293600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:98283400-98300600	Weak transcription	Fetal Intestine Small	intestine
37	chr10:98284200-98292800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:98284200-98293400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:98284200-98294200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr10:98284400-98289600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:98284400-98289600	Strong transcription	NHLF	lung
42	chr10:98284400-98293000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:98284400-98294000	Strong transcription	Fetal Intestine Large	intestine
44	chr10:98284400-98295000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:98284600-98291600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:98284600-98291600	Strong transcription	HMEC	breast
47	chr10:98284600-98291800	Strong transcription	GM12878-XiMat	blood
48	chr10:98284600-98293000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr10:98284600-98293200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:98284600-98293200	Strong transcription	Primary T helper cells PMA-I stimulated	--

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