Variant report

Variant	rs7896621
Chromosome Location	chr10:98272445-98272446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98133716..98135403-chr10:98271764..98273764,2	K562	blood:
2	chr10:98267259..98269511-chr10:98271811..98273644,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095587	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10047310	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188816	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240642	0.96[AFR][1000 genomes]
rs12242731	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245836	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263129	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264651	1.00[AMR][1000 genomes]
rs12269502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56358959	1.00[EUR][1000 genomes]
rs58757826	1.00[EUR][1000 genomes]
rs7069486	1.00[EUR][1000 genomes]
rs7093362	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs730443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320778	1.00[EUR][1000 genomes]
rs73324568	1.00[EUR][1000 genomes]
rs73324586	1.00[EUR][1000 genomes]
rs73326403	1.00[EUR][1000 genomes]
rs73326427	1.00[EUR][1000 genomes]
rs7896485	1.00[EUR][1000 genomes]
rs7901357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907262	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7910630	1.00[EUR][1000 genomes]
rs7911463	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916172	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98271800-98273400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr10:98272000-98272600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
3	chr10:98272000-98272600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98272000-98272600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
5	chr10:98272000-98272600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:98272000-98272600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
7	chr10:98272000-98272600	Flanking Active TSS	Brain Substantia Nigra	brain
8	chr10:98272000-98272800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:98272000-98272800	Bivalent Enhancer	Placenta	Placenta
10	chr10:98272000-98272800	Bivalent Enhancer	Small Intestine	intestine
11	chr10:98272000-98273000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:98272000-98273200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr10:98272000-98273200	Flanking Bivalent TSS/Enh	HepG2	liver
14	chr10:98272000-98274000	Bivalent Enhancer	Fetal Brain Male	brain
15	chr10:98272000-98274400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr10:98272200-98272600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
17	chr10:98272200-98272600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:98272200-98272600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:98272200-98272600	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
20	chr10:98272200-98272600	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
21	chr10:98272200-98272600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
22	chr10:98272200-98272600	Flanking Active TSS	Brain Angular Gyrus	brain
23	chr10:98272200-98272600	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr10:98272200-98272600	Flanking Active TSS	Brain Cingulate Gyrus	brain
25	chr10:98272200-98272600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
26	chr10:98272200-98272600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:98272200-98272600	Flanking Active TSS	Left Ventricle	heart
28	chr10:98272200-98272600	Bivalent Enhancer	Lung	lung
29	chr10:98272200-98272600	Flanking Active TSS	Ovary	ovary
30	chr10:98272200-98272600	Enhancers	Spleen	Spleen
31	chr10:98272200-98272800	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr10:98272200-98272800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
33	chr10:98272200-98272800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:98272200-98272800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:98272200-98272800	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr10:98272200-98272800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
37	chr10:98272200-98272800	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
38	chr10:98272200-98272800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
39	chr10:98272200-98272800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
40	chr10:98272200-98272800	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
41	chr10:98272200-98272800	Flanking Bivalent TSS/Enh	NH-A	brain
42	chr10:98272200-98272800	Flanking Bivalent TSS/Enh	NHEK	skin
43	chr10:98272200-98273000	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:98272200-98273200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:98272200-98273200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
46	chr10:98272200-98273200	Active TSS	Right Atrium	heart
47	chr10:98272200-98273200	Flanking Bivalent TSS/Enh	Osteobl	bone
48	chr10:98272200-98273400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
49	chr10:98272200-98273400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:98272200-98273400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine

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