Variant report

Variant	rs12255771
Chromosome Location	chr10:98312459-98312460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10047310	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188816	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1172465	1.00[EUR][1000 genomes]
rs12240642	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12242731	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245836	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248288	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262056	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263129	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264651	1.00[AMR][1000 genomes]
rs12269502	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56358959	1.00[EUR][1000 genomes]
rs58757826	1.00[EUR][1000 genomes]
rs7069486	1.00[EUR][1000 genomes]
rs7093362	0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs730443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320778	1.00[EUR][1000 genomes]
rs73324568	1.00[EUR][1000 genomes]
rs73324586	1.00[EUR][1000 genomes]
rs73326403	1.00[EUR][1000 genomes]
rs73326427	1.00[EUR][1000 genomes]
rs7895789	1.00[EUR][1000 genomes]
rs7896485	1.00[EUR][1000 genomes]
rs7896621	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7901357	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902934	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907262	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7910630	1.00[EUR][1000 genomes]
rs7911463	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916172	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
4	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:98277400-98315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:98278600-98318800	Weak transcription	Small Intestine	intestine
10	chr10:98286200-98323000	Weak transcription	Lung	lung
11	chr10:98286600-98338400	Weak transcription	Aorta	Aorta
12	chr10:98286600-98339400	Weak transcription	Brain Angular Gyrus	brain
13	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
14	chr10:98289400-98318600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr10:98290000-98313400	Weak transcription	Gastric	stomach
16	chr10:98290000-98344200	Weak transcription	Spleen	Spleen
17	chr10:98292600-98344800	Weak transcription	Brain Germinal Matrix	brain
18	chr10:98293600-98326200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:98295400-98320800	Weak transcription	Fetal Heart	heart
20	chr10:98296200-98320600	Strong transcription	Duodenum Mucosa	Duodenum
21	chr10:98297000-98329200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr10:98297200-98325000	Strong transcription	Placenta	Placenta
23	chr10:98297600-98313800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:98297800-98324800	Strong transcription	Dnd41	blood
25	chr10:98298000-98315600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:98298200-98313400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:98298200-98315400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:98298200-98322400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:98298400-98324600	Strong transcription	Primary B cells from cord blood	blood
30	chr10:98298600-98314400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:98298600-98315600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:98298600-98324600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr10:98298600-98325000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:98298600-98325200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr10:98298800-98320000	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr10:98298800-98324200	Strong transcription	Fetal Thymus	thymus
37	chr10:98298800-98325600	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:98299000-98325200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:98299200-98314400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:98299400-98314400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:98299400-98324200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr10:98300000-98315400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:98300800-98322400	Strong transcription	HepG2	liver
44	chr10:98301200-98322600	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr10:98301400-98313600	Strong transcription	NH-A	brain
46	chr10:98301400-98315000	Strong transcription	Hela-S3	cervix
47	chr10:98301600-98315000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:98301800-98312800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:98302600-98313200	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:98304000-98318400	Weak transcription	Ovary	ovary

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