Variant report

Variant	rs7093362
Chromosome Location	chr10:98298467-98298468
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10047310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11188816	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1172465	1.00[EUR][1000 genomes]
rs12240642	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs12242731	0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242967	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12245836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12249844	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12255771	0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12256621	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12262056	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12264651	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269502	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56358959	1.00[EUR][1000 genomes]
rs58757826	1.00[EUR][1000 genomes]
rs7069486	1.00[EUR][1000 genomes]
rs730443	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73320778	1.00[EUR][1000 genomes]
rs73324568	1.00[EUR][1000 genomes]
rs73324586	1.00[EUR][1000 genomes]
rs73326403	1.00[EUR][1000 genomes]
rs73326427	1.00[EUR][1000 genomes]
rs7895789	1.00[EUR][1000 genomes]
rs7896485	1.00[EUR][1000 genomes]
rs7896621	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7901357	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902934	0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907262	1.00[EUR][1000 genomes]
rs7910630	1.00[EUR][1000 genomes]
rs7911463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7916172	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918075	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98274200-98303600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:98274200-98314000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:98274200-98328600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:98274200-98328600	Weak transcription	Pancreas	Pancrea
5	chr10:98274200-98331200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:98274400-98303400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:98275200-98306600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:98276400-98301600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:98276400-98319800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:98276400-98343200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:98277400-98315400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:98277800-98330400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:98278600-98318800	Weak transcription	Small Intestine	intestine
14	chr10:98283200-98300600	Weak transcription	Fetal Stomach	stomach
15	chr10:98283400-98300600	Weak transcription	Fetal Intestine Small	intestine
16	chr10:98286200-98323000	Weak transcription	Lung	lung
17	chr10:98286600-98300800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:98286600-98306400	Weak transcription	Brain Substantia Nigra	brain
19	chr10:98286600-98306400	Weak transcription	Right Ventricle	heart
20	chr10:98286600-98306800	Weak transcription	Fetal Brain Male	brain
21	chr10:98286600-98338400	Weak transcription	Aorta	Aorta
22	chr10:98286600-98339400	Weak transcription	Brain Angular Gyrus	brain
23	chr10:98286600-98345600	Weak transcription	Esophagus	oesophagus
24	chr10:98287000-98303400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:98288000-98298600	Weak transcription	Fetal Kidney	kidney
26	chr10:98288000-98302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:98288000-98305600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:98289400-98301200	Weak transcription	Colon Smooth Muscle	Colon
29	chr10:98289400-98318600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr10:98289600-98299200	Weak transcription	NHLF	lung
31	chr10:98289800-98300600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:98290000-98301400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:98290000-98301400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:98290000-98302800	Weak transcription	Left Ventricle	heart
35	chr10:98290000-98303400	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:98290000-98305600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:98290000-98310000	Weak transcription	Fetal Brain Female	brain
38	chr10:98290000-98313400	Weak transcription	Gastric	stomach
39	chr10:98290000-98344200	Weak transcription	Spleen	Spleen
40	chr10:98290200-98300600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:98290200-98303400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:98290800-98301200	Weak transcription	Ovary	ovary
43	chr10:98291000-98301400	Weak transcription	K562	blood
44	chr10:98291200-98298800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:98291200-98301400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr10:98291200-98303400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:98291200-98305200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr10:98291200-98305600	Weak transcription	Colonic Mucosa	Colon
49	chr10:98291600-98298600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:98291600-98298600	Weak transcription	Brain Anterior Caudate	brain

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