Variant report
| Variant | rs73324586 |
|---|---|
| Chromosome Location | chr10:98168788-98168789 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:98164643..98166499-chr10:98168043..98170524,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10047310 | 1.00[EUR][1000 genomes] |
| rs11188816 | 1.00[EUR][1000 genomes] |
| rs12242731 | 1.00[EUR][1000 genomes] |
| rs12242967 | 1.00[EUR][1000 genomes] |
| rs12245836 | 1.00[EUR][1000 genomes] |
| rs12248288 | 1.00[EUR][1000 genomes] |
| rs12249844 | 1.00[EUR][1000 genomes] |
| rs12255771 | 1.00[EUR][1000 genomes] |
| rs12256621 | 1.00[EUR][1000 genomes] |
| rs12262056 | 1.00[EUR][1000 genomes] |
| rs12263129 | 1.00[EUR][1000 genomes] |
| rs12269502 | 1.00[EUR][1000 genomes] |
| rs1902709 | 1.00[EUR][1000 genomes] |
| rs56358959 | 1.00[EUR][1000 genomes] |
| rs58757826 | 1.00[EUR][1000 genomes] |
| rs7074656 | 1.00[AMR][1000 genomes] |
| rs7085521 | 1.00[EUR][1000 genomes] |
| rs7093362 | 1.00[EUR][1000 genomes] |
| rs730443 | 1.00[EUR][1000 genomes] |
| rs73316899 | 1.00[EUR][1000 genomes] |
| rs73316902 | 1.00[EUR][1000 genomes] |
| rs73318839 | 1.00[EUR][1000 genomes] |
| rs73320778 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73324568 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73326403 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73326427 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7896485 | 1.00[EUR][1000 genomes] |
| rs7896621 | 1.00[EUR][1000 genomes] |
| rs7901357 | 1.00[EUR][1000 genomes] |
| rs7902934 | 1.00[EUR][1000 genomes] |
| rs7907262 | 1.00[EUR][1000 genomes] |
| rs7910630 | 1.00[EUR][1000 genomes] |
| rs7911463 | 1.00[EUR][1000 genomes] |
| rs7916172 | 1.00[EUR][1000 genomes] |
| rs7922911 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3413353 | chr10:98039370-98561524 | Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| 2 | nsv831950 | chr10:98080972-98245434 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1047657 | chr10:98123234-98183487 | Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:98159800-98172800 | Weak transcription | Left Ventricle | heart |
| 2 | chr10:98164800-98170600 | Strong transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 3 | chr10:98167800-98172200 | Weak transcription | Fetal Heart | heart |
