Variant report

Variant	rs10227100
Chromosome Location	chr7:99406865-99406866
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10156164	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10224569	1.00[EUR][1000 genomes]
rs10231168	1.00[EUR][1000 genomes]
rs10239632	1.00[EUR][1000 genomes]
rs10242209	1.00[EUR][1000 genomes]
rs10256106	1.00[EUR][1000 genomes]
rs10256395	1.00[EUR][1000 genomes]
rs10256572	1.00[EUR][1000 genomes]
rs10264272	1.00[EUR][1000 genomes]
rs10264769	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270499	1.00[EUR][1000 genomes]
rs10271217	1.00[EUR][1000 genomes]
rs10272855	1.00[EUR][1000 genomes]
rs1083108	1.00[EUR][1000 genomes]
rs1083109	1.00[EUR][1000 genomes]
rs11487060	1.00[EUR][1000 genomes]
rs11973853	1.00[EUR][1000 genomes]
rs11975671	1.00[EUR][1000 genomes]
rs11975707	1.00[EUR][1000 genomes]
rs11982018	1.00[EUR][1000 genomes]
rs11983808	1.00[EUR][1000 genomes]
rs12113473	1.00[EUR][1000 genomes]
rs12114000	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2017121	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2687074	1.00[EUR][1000 genomes]
rs2687080	1.00[EUR][1000 genomes]
rs28443180	1.00[EUR][1000 genomes]
rs28539499	1.00[EUR][1000 genomes]
rs28647266	1.00[EUR][1000 genomes]
rs2980374	1.00[EUR][1000 genomes]
rs34183388	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45616432	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60135240	1.00[EUR][1000 genomes]
rs6963623	1.00[EUR][1000 genomes]
rs6975773	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs776740	1.00[EUR][1000 genomes]
rs7801671	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7807561	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811022	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3409649	chr7:99406566-99413964	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99404400-99407000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:99406400-99407400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:99406600-99407400	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr7:99406800-99407400	Active TSS	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links