Variant report

Variant	rs10242209
Chromosome Location	chr7:99335046-99335047
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:99334473-99335074	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99331906..99334521-chr7:99334977..99338227,4	MCF-7	breast:

Variant related genes	Relation type
CYP3A7	TF binding region
ENSG00000160870	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10156164	1.00[EUR][1000 genomes]
rs10224569	1.00[EUR][1000 genomes]
rs10227100	1.00[EUR][1000 genomes]
rs10231168	1.00[EUR][1000 genomes]
rs10239093	0.85[AFR][1000 genomes]
rs10239632	1.00[EUR][1000 genomes]
rs10254560	0.85[AFR][1000 genomes]
rs10256106	1.00[EUR][1000 genomes]
rs10256395	1.00[EUR][1000 genomes]
rs10256572	1.00[EUR][1000 genomes]
rs10264272	1.00[EUR][1000 genomes]
rs10264769	1.00[EUR][1000 genomes]
rs10270499	1.00[EUR][1000 genomes]
rs10271217	1.00[EUR][1000 genomes]
rs10272855	1.00[EUR][1000 genomes]
rs1083108	1.00[EUR][1000 genomes]
rs1083109	1.00[EUR][1000 genomes]
rs11487060	1.00[EUR][1000 genomes]
rs11973853	1.00[EUR][1000 genomes]
rs11975671	1.00[EUR][1000 genomes]
rs11975707	1.00[EUR][1000 genomes]
rs11982018	1.00[EUR][1000 genomes]
rs11983808	1.00[EUR][1000 genomes]
rs12113473	1.00[EUR][1000 genomes]
rs12114000	1.00[EUR][1000 genomes]
rs2017121	1.00[EUR][1000 genomes]
rs2687074	1.00[EUR][1000 genomes]
rs2687080	1.00[EUR][1000 genomes]
rs28443180	1.00[EUR][1000 genomes]
rs28539499	1.00[EUR][1000 genomes]
rs28647266	1.00[EUR][1000 genomes]
rs2980374	1.00[EUR][1000 genomes]
rs34183388	1.00[EUR][1000 genomes]
rs45616432	1.00[EUR][1000 genomes]
rs60135240	1.00[EUR][1000 genomes]
rs6963623	1.00[EUR][1000 genomes]
rs6975773	1.00[EUR][1000 genomes]
rs776740	1.00[EUR][1000 genomes]
rs7801671	1.00[EUR][1000 genomes]
rs7807561	1.00[EUR][1000 genomes]
rs7811022	1.00[EUR][1000 genomes]
rs7811025	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99303200-99337200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr7:99306000-99339000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:99306800-99340800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:99311800-99349000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:99320000-99337200	Weak transcription	Brain Angular Gyrus	brain
6	chr7:99321800-99338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:99324400-99339200	Weak transcription	Brain Substantia Nigra	brain
8	chr7:99327200-99339200	Weak transcription	Brain Anterior Caudate	brain
9	chr7:99331200-99337600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:99331400-99336400	Weak transcription	Aorta	Aorta
11	chr7:99331400-99338800	Weak transcription	Liver	Liver
12	chr7:99333200-99336200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr7:99333400-99335200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:99333400-99335200	Weak transcription	HepG2	liver
15	chr7:99333600-99339600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:99333800-99337000	Enhancers	HMEC	breast
17	chr7:99334200-99335400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:99334200-99336800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:99334400-99335200	Enhancers	NHEK	skin
20	chr7:99334400-99335800	Strong transcription	Adipose Nuclei	Adipose
21	chr7:99334400-99336600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:99334400-99337600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:99334400-99337800	Strong transcription	Left Ventricle	heart
24	chr7:99334600-99335800	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr7:99334600-99338800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:99334800-99335800	Strong transcription	Brain Hippocampus Middle	brain
27	chr7:99334800-99340800	Weak transcription	Pancreas	Pancrea
28	chr7:99335000-99335200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:99335000-99335600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:99335000-99336000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:99335000-99336000	Enhancers	Dnd41	blood
32	chr7:99335000-99337800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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