Variant report

Variant	rs10270499
Chromosome Location	chr7:99279710-99279711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99277694..99280617-chr7:99280662..99284055,5	K562	blood:
2	chr7:99226823..99229371-chr7:99278363..99279988,2	K562	blood:
3	chr7:99214995..99216621-chr7:99278112..99280830,2	MCF-7	breast:
4	chr7:99214034..99216818-chr7:99278622..99282260,3	K562	blood:
5	chr7:99278416..99280408-chr7:99285917..99287760,2	K562	blood:

Variant related genes	Relation type
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10156164	1.00[EUR][1000 genomes]
rs10224569	1.00[EUR][1000 genomes]
rs10227100	1.00[EUR][1000 genomes]
rs10231168	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10239632	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242209	1.00[EUR][1000 genomes]
rs10256106	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256395	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256572	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264769	1.00[EUR][1000 genomes]
rs10271217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10272855	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1083108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1083109	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11487060	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11973853	1.00[EUR][1000 genomes]
rs11975671	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975707	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11982018	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983808	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12113473	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12114000	1.00[EUR][1000 genomes]
rs2017121	1.00[EUR][1000 genomes]
rs2687074	1.00[EUR][1000 genomes]
rs2687080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28443180	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28451617	0.83[AFR][1000 genomes]
rs28539499	1.00[EUR][1000 genomes]
rs28647266	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28988589	0.91[AMR][1000 genomes]
rs2980374	1.00[EUR][1000 genomes]
rs34183388	1.00[EUR][1000 genomes]
rs45616432	1.00[EUR][1000 genomes]
rs60135240	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61193950	0.87[AFR][1000 genomes]
rs6963623	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6975773	1.00[EUR][1000 genomes]
rs776740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801671	1.00[EUR][1000 genomes]
rs7807561	1.00[EUR][1000 genomes]
rs7811022	1.00[EUR][1000 genomes]
rs7811025	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99273800-99290400	Weak transcription	Primary T cells from cord blood	blood
2	chr7:99277000-99295800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:99277200-99281200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:99277200-99282800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:99277800-99282400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:99278000-99290800	Weak transcription	Pancreas	Pancrea
7	chr7:99278200-99283000	Weak transcription	HepG2	liver
8	chr7:99278400-99282600	Weak transcription	Liver	Liver
9	chr7:99278400-99289000	Weak transcription	Psoas Muscle	Psoas
10	chr7:99278600-99282800	Weak transcription	K562	blood
11	chr7:99279600-99279800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:99279600-99279800	ZNF genes & repeats	Fetal Intestine Small	intestine

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