Variant report

Variant	rs28539499
Chromosome Location	chr7:99386532-99386533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99380939..99382491-chr7:99384838..99386622,2	K562	blood:

Variant related genes	Relation type
ENSG00000160868	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10156164	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10224569	1.00[EUR][1000 genomes]
rs10227100	1.00[EUR][1000 genomes]
rs10231168	1.00[EUR][1000 genomes]
rs10239632	1.00[EUR][1000 genomes]
rs10242209	1.00[EUR][1000 genomes]
rs10256106	1.00[EUR][1000 genomes]
rs10256395	1.00[EUR][1000 genomes]
rs10256572	1.00[EUR][1000 genomes]
rs10264272	1.00[EUR][1000 genomes]
rs10264769	1.00[EUR][1000 genomes]
rs10270499	1.00[EUR][1000 genomes]
rs10271217	1.00[EUR][1000 genomes]
rs10272855	1.00[EUR][1000 genomes]
rs1083108	1.00[EUR][1000 genomes]
rs1083109	1.00[EUR][1000 genomes]
rs11487060	1.00[EUR][1000 genomes]
rs11973853	1.00[EUR][1000 genomes]
rs11975671	1.00[EUR][1000 genomes]
rs11975707	1.00[EUR][1000 genomes]
rs11982018	1.00[EUR][1000 genomes]
rs11983808	1.00[EUR][1000 genomes]
rs12113473	1.00[EUR][1000 genomes]
rs12114000	1.00[EUR][1000 genomes]
rs2017121	1.00[EUR][1000 genomes]
rs2687074	1.00[EUR][1000 genomes]
rs2687080	1.00[EUR][1000 genomes]
rs28443180	1.00[EUR][1000 genomes]
rs28647266	1.00[EUR][1000 genomes]
rs2980374	1.00[EUR][1000 genomes]
rs34183388	1.00[EUR][1000 genomes]
rs45616432	1.00[EUR][1000 genomes]
rs60135240	1.00[EUR][1000 genomes]
rs6963623	1.00[EUR][1000 genomes]
rs6975773	1.00[EUR][1000 genomes]
rs776740	1.00[EUR][1000 genomes]
rs7801671	1.00[EUR][1000 genomes]
rs7807561	1.00[EUR][1000 genomes]
rs7811022	1.00[EUR][1000 genomes]
rs7811025	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv970558	chr7:99358519-99389907	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99379800-99387000	Enhancers	Fetal Intestine Small	intestine
2	chr7:99383400-99390000	Enhancers	HMEC	breast
3	chr7:99383600-99386800	Enhancers	Fetal Intestine Large	intestine
4	chr7:99383600-99390000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:99384200-99388200	Weak transcription	Esophagus	oesophagus
6	chr7:99384400-99386800	Enhancers	Primary T cells from cord blood	blood
7	chr7:99384400-99386800	Enhancers	HepG2	liver
8	chr7:99385000-99389800	Weak transcription	K562	blood
9	chr7:99385200-99387600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:99385400-99388200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr7:99385800-99389600	Weak transcription	Pancreas	Pancrea
12	chr7:99385800-99391600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:99386000-99386800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:99386000-99386800	Enhancers	Fetal Thymus	thymus
15	chr7:99386000-99386800	Enhancers	NHEK	skin
16	chr7:99386000-99387000	Enhancers	Psoas Muscle	Psoas
17	chr7:99386000-99389800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:99386000-99389800	Enhancers	NHDF-Ad	bronchial
19	chr7:99386000-99389800	Enhancers	Osteobl	bone
20	chr7:99386200-99386600	Enhancers	GM12878-XiMat	blood
21	chr7:99386200-99386800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:99386200-99388800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:99386200-99389000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:99386200-99389200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:99386200-99391800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr7:99386200-99392400	Weak transcription	Stomach Mucosa	stomach
27	chr7:99386400-99387600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr7:99386400-99388400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr7:99386400-99389800	Enhancers	Liver	Liver

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