Variant report

Variant	rs7807561
Chromosome Location	chr7:99432519-99432520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99427440..99433214-chr7:99433946..99436669,7	K562	blood:
2	chr7:99423210..99426949-chr7:99431563..99434644,4	K562	blood:
3	chr7:99429881..99432803-chr7:99433485..99436669,5	K562	blood:
4	chr7:99148029..99149878-chr7:99432203..99434942,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000021461	Chromatin interaction
ENSG00000221909	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10156164	1.00[EUR][1000 genomes]
rs10224569	1.00[EUR][1000 genomes]
rs10227100	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10231168	1.00[EUR][1000 genomes]
rs10239632	1.00[EUR][1000 genomes]
rs10242209	1.00[EUR][1000 genomes]
rs10256106	1.00[EUR][1000 genomes]
rs10256395	1.00[EUR][1000 genomes]
rs10256572	1.00[EUR][1000 genomes]
rs10264272	1.00[EUR][1000 genomes]
rs10264769	1.00[EUR][1000 genomes]
rs10270499	1.00[EUR][1000 genomes]
rs10271217	1.00[EUR][1000 genomes]
rs10272855	1.00[EUR][1000 genomes]
rs1083108	1.00[EUR][1000 genomes]
rs1083109	1.00[EUR][1000 genomes]
rs11487060	1.00[EUR][1000 genomes]
rs11973853	1.00[EUR][1000 genomes]
rs11975671	1.00[EUR][1000 genomes]
rs11975707	1.00[EUR][1000 genomes]
rs11982018	1.00[EUR][1000 genomes]
rs11983808	1.00[EUR][1000 genomes]
rs12113473	1.00[EUR][1000 genomes]
rs12114000	1.00[EUR][1000 genomes]
rs2017121	1.00[EUR][1000 genomes]
rs2687074	1.00[EUR][1000 genomes]
rs2687080	1.00[EUR][1000 genomes]
rs28443180	1.00[EUR][1000 genomes]
rs28539499	1.00[EUR][1000 genomes]
rs28647266	1.00[EUR][1000 genomes]
rs2980374	1.00[EUR][1000 genomes]
rs34183388	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45616432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60135240	1.00[EUR][1000 genomes]
rs6963623	1.00[EUR][1000 genomes]
rs6975773	1.00[EUR][1000 genomes]
rs776740	1.00[EUR][1000 genomes]
rs7801671	1.00[EUR][1000 genomes]
rs7811022	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811025	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99422800-99437400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:99427600-99432600	Enhancers	HepG2	liver
3	chr7:99427600-99435400	Weak transcription	Adipose Nuclei	Adipose
4	chr7:99428600-99432800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr7:99428800-99435000	Weak transcription	Stomach Mucosa	stomach
6	chr7:99429600-99435000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:99429800-99435200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:99430400-99432600	Enhancers	Dnd41	blood
9	chr7:99431800-99432600	Enhancers	K562	blood
10	chr7:99431800-99433800	Weak transcription	Liver	Liver
11	chr7:99431800-99435400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr7:99431800-99435400	Weak transcription	Pancreas	Pancrea
13	chr7:99432000-99435000	Weak transcription	Fetal Intestine Large	intestine

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