Variant report

Variant	rs10272855
Chromosome Location	chr7:99234838-99234839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99215464..99217026-chr7:99233198..99234980,2	K562	blood:
2	chr7:99223092..99225778-chr7:99231932..99235796,4	K562	blood:
3	chr7:99233858..99235993-chr7:99264652..99267032,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10156164	1.00[EUR][1000 genomes]
rs10224569	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10227100	1.00[EUR][1000 genomes]
rs10231168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10239632	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242209	1.00[EUR][1000 genomes]
rs10249369	0.89[MKK][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs10256106	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256395	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256572	0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264272	1.00[CHB][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264769	1.00[EUR][1000 genomes]
rs10270499	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271217	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1083108	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1083109	1.00[EUR][1000 genomes]
rs11487060	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975671	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11982018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983808	0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12113473	0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12114000	1.00[EUR][1000 genomes]
rs13220949	1.00[CHB][hapmap]
rs2017121	1.00[EUR][1000 genomes]
rs2037500	0.83[YRI][hapmap]
rs2687074	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2687080	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28365076	1.00[CEU][hapmap]
rs28443180	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28451617	1.00[ASW][hapmap];1.00[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes]
rs28539499	1.00[EUR][1000 genomes]
rs28647266	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2980374	1.00[EUR][1000 genomes]
rs34183388	1.00[EUR][1000 genomes]
rs3735454	1.00[CHB][hapmap]
rs45616432	1.00[EUR][1000 genomes]
rs60135240	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61193950	0.81[AFR][1000 genomes]
rs6963623	1.00[EUR][1000 genomes]
rs6975773	1.00[EUR][1000 genomes]
rs776740	0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801671	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7807561	1.00[EUR][1000 genomes]
rs7811022	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7811025	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv981815	chr7:99224245-99235459	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99215000-99236000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99224000-99241800	Weak transcription	HSMMtube	muscle
3	chr7:99225400-99243000	Weak transcription	Fetal Brain Male	brain
4	chr7:99225800-99241800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:99228200-99244200	Weak transcription	Psoas Muscle	Psoas
6	chr7:99228400-99236000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:99228400-99258000	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:99228400-99258800	Weak transcription	Ovary	ovary
9	chr7:99228800-99249000	Weak transcription	Small Intestine	intestine
10	chr7:99229000-99235800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:99229200-99241600	Weak transcription	Brain Angular Gyrus	brain
12	chr7:99229200-99242000	Weak transcription	NHDF-Ad	bronchial
13	chr7:99229200-99243200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:99229200-99267400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr7:99229200-99275000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:99229400-99236000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:99229400-99236800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:99229400-99257400	Weak transcription	Fetal Lung	lung
19	chr7:99229400-99257800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:99229600-99236200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:99229800-99235600	Weak transcription	Right Ventricle	heart
22	chr7:99229800-99235800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr7:99229800-99235800	Weak transcription	HSMM	muscle
24	chr7:99229800-99236000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:99229800-99241200	Weak transcription	Aorta	Aorta
26	chr7:99229800-99255400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr7:99229800-99257200	Weak transcription	Esophagus	oesophagus
28	chr7:99229800-99257600	Weak transcription	Pancreas	Pancrea
29	chr7:99229800-99260200	Weak transcription	Left Ventricle	heart
30	chr7:99229800-99272600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr7:99230000-99236000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:99230200-99236200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:99230200-99236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:99230200-99243000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:99230200-99257200	Weak transcription	Gastric	stomach
36	chr7:99230400-99235400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr7:99230400-99241800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr7:99230400-99243800	Weak transcription	NHLF	lung
39	chr7:99230400-99249000	Weak transcription	Colonic Mucosa	Colon
40	chr7:99230400-99257600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr7:99230400-99272000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr7:99230600-99243400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr7:99230800-99241600	Weak transcription	Liver	Liver
44	chr7:99230800-99243200	Weak transcription	Thymus	Thymus
45	chr7:99230800-99258000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr7:99231000-99235000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr7:99231400-99241200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr7:99231400-99248800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr7:99231600-99236600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr7:99231600-99237000	Weak transcription	Rectal Mucosa Donor 29	rectum

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