Variant report

Variant	rs10256572
Chromosome Location	chr7:99296069-99296070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10156164	1.00[EUR][1000 genomes]
rs10224569	1.00[EUR][1000 genomes]
rs10227100	1.00[EUR][1000 genomes]
rs10231168	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10239632	0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242209	1.00[EUR][1000 genomes]
rs10256106	0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256395	0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264769	1.00[EUR][1000 genomes]
rs10270499	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271217	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10272855	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1083108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1083109	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11487060	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11973853	1.00[EUR][1000 genomes]
rs11975671	1.00[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11975707	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11982018	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983808	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12113473	0.81[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12114000	1.00[EUR][1000 genomes]
rs2017121	1.00[EUR][1000 genomes]
rs2037500	0.85[YRI][hapmap]
rs2687074	1.00[EUR][1000 genomes]
rs2687080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28443180	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28451617	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs28539499	1.00[EUR][1000 genomes]
rs28647266	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28988589	0.91[AMR][1000 genomes]
rs2980374	1.00[EUR][1000 genomes]
rs34183388	1.00[EUR][1000 genomes]
rs45616432	1.00[EUR][1000 genomes]
rs60135240	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61193950	0.81[AFR][1000 genomes]
rs6963623	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6975773	1.00[EUR][1000 genomes]
rs776740	0.86[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801671	1.00[EUR][1000 genomes]
rs7807561	1.00[EUR][1000 genomes]
rs7811022	1.00[EUR][1000 genomes]
rs7811025	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3378448	chr7:99295540-99331065	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99291400-99297600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:99291400-99297600	Weak transcription	Esophagus	oesophagus
3	chr7:99291400-99298800	Weak transcription	Aorta	Aorta
4	chr7:99291400-99306600	Weak transcription	Left Ventricle	heart
5	chr7:99292200-99296200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:99292200-99296200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:99292200-99297000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:99292400-99296400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:99292400-99298600	Enhancers	HepG2	liver
10	chr7:99293600-99297000	Weak transcription	Gastric	stomach
11	chr7:99294200-99301600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr7:99294400-99301400	Weak transcription	Liver	Liver
13	chr7:99295600-99297600	Enhancers	Fetal Intestine Large	intestine
14	chr7:99295800-99296400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:99295800-99296400	Enhancers	Stomach Mucosa	stomach
16	chr7:99295800-99296800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr7:99295800-99297400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr7:99295800-99297400	Enhancers	Duodenum Mucosa	Duodenum
19	chr7:99295800-99297400	Enhancers	NHEK	skin
20	chr7:99295800-99297800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr7:99295800-99298200	Enhancers	K562	blood
22	chr7:99296000-99296400	Enhancers	A549	lung
23	chr7:99296000-99297400	Weak transcription	Pancreas	Pancrea
24	chr7:99296000-99297800	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links