Variant report

Variant	rs6975773
Chromosome Location	chr7:99372568-99372569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10156164	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10224569	1.00[EUR][1000 genomes]
rs10227100	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10231168	1.00[EUR][1000 genomes]
rs10239632	1.00[EUR][1000 genomes]
rs10242209	1.00[EUR][1000 genomes]
rs10256106	1.00[EUR][1000 genomes]
rs10256395	1.00[EUR][1000 genomes]
rs10256572	1.00[EUR][1000 genomes]
rs10264272	1.00[EUR][1000 genomes]
rs10264769	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270499	1.00[EUR][1000 genomes]
rs10271217	1.00[EUR][1000 genomes]
rs10272855	1.00[EUR][1000 genomes]
rs1083108	1.00[EUR][1000 genomes]
rs1083109	1.00[EUR][1000 genomes]
rs11487060	1.00[EUR][1000 genomes]
rs11973853	1.00[EUR][1000 genomes]
rs11975671	1.00[EUR][1000 genomes]
rs11975707	1.00[EUR][1000 genomes]
rs11982018	1.00[EUR][1000 genomes]
rs11983808	1.00[EUR][1000 genomes]
rs12113473	1.00[EUR][1000 genomes]
rs12114000	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2017121	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2687074	1.00[EUR][1000 genomes]
rs2687080	1.00[EUR][1000 genomes]
rs28443180	1.00[EUR][1000 genomes]
rs28539499	1.00[EUR][1000 genomes]
rs28647266	1.00[EUR][1000 genomes]
rs2980374	1.00[EUR][1000 genomes]
rs34183388	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45616432	1.00[EUR][1000 genomes]
rs60135240	1.00[EUR][1000 genomes]
rs6963623	1.00[EUR][1000 genomes]
rs776740	1.00[EUR][1000 genomes]
rs7801671	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7807561	1.00[EUR][1000 genomes]
rs7811022	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7811025	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331003	chr7:99337054-99386069	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3450108	chr7:99339737-99383419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482109	chr7:99354604-99381808	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv970558	chr7:99358519-99389907	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99370000-99375400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:99370200-99379200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:99370800-99374200	Weak transcription	Fetal Intestine Large	intestine
4	chr7:99370800-99374800	Weak transcription	HepG2	liver
5	chr7:99371200-99379200	Weak transcription	Liver	Liver
6	chr7:99371600-99375000	Weak transcription	Fetal Intestine Small	intestine

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