Variant report
Variant | rs10264769 |
---|---|
Chromosome Location | chr7:99378576-99378577 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10156164 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10224569 | 1.00[EUR][1000 genomes] |
rs10227100 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10231168 | 1.00[EUR][1000 genomes] |
rs10239632 | 1.00[EUR][1000 genomes] |
rs10242209 | 1.00[EUR][1000 genomes] |
rs10256106 | 1.00[EUR][1000 genomes] |
rs10256395 | 1.00[EUR][1000 genomes] |
rs10256572 | 1.00[EUR][1000 genomes] |
rs10264272 | 1.00[EUR][1000 genomes] |
rs10270499 | 1.00[EUR][1000 genomes] |
rs10271217 | 1.00[EUR][1000 genomes] |
rs10272855 | 1.00[EUR][1000 genomes] |
rs1083108 | 1.00[EUR][1000 genomes] |
rs1083109 | 1.00[EUR][1000 genomes] |
rs11487060 | 1.00[EUR][1000 genomes] |
rs11973853 | 1.00[EUR][1000 genomes] |
rs11975671 | 1.00[EUR][1000 genomes] |
rs11975707 | 1.00[EUR][1000 genomes] |
rs11982018 | 1.00[EUR][1000 genomes] |
rs11983808 | 1.00[EUR][1000 genomes] |
rs12113473 | 1.00[EUR][1000 genomes] |
rs12114000 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2017121 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2687074 | 1.00[EUR][1000 genomes] |
rs2687080 | 1.00[EUR][1000 genomes] |
rs28443180 | 1.00[EUR][1000 genomes] |
rs28539499 | 1.00[EUR][1000 genomes] |
rs28647266 | 1.00[EUR][1000 genomes] |
rs2980374 | 1.00[EUR][1000 genomes] |
rs34183388 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs45616432 | 1.00[EUR][1000 genomes] |
rs60135240 | 1.00[EUR][1000 genomes] |
rs6963623 | 1.00[EUR][1000 genomes] |
rs6975773 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs776740 | 1.00[EUR][1000 genomes] |
rs7801671 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7807561 | 1.00[EUR][1000 genomes] |
rs7811022 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7811025 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3331003 | chr7:99337054-99386069 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
2 | esv3450108 | chr7:99339737-99383419 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
3 | esv1827709 | chr7:99353500-99440051 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
4 | nsv482109 | chr7:99354604-99381808 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
5 | nsv970558 | chr7:99358519-99389907 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:99370200-99379200 | Weak transcription | Duodenum Mucosa | Duodenum |
2 | chr7:99371200-99379200 | Weak transcription | Liver | Liver |
3 | chr7:99375200-99379200 | Weak transcription | HepG2 | liver |
4 | chr7:99375600-99379800 | Weak transcription | Fetal Intestine Small | intestine |
5 | chr7:99375800-99380800 | Weak transcription | Fetal Intestine Large | intestine |