Variant report

Variant	rs10744764
Chromosome Location	chr12:121893020-121893021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121888904..121894167-chr12:121900825..121906643,6	K562	blood:
2	chr12:121891205..121893580-chr12:121898932..121901141,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10444489	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10444491	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10444492	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1064951	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10744763	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10774594	0.96[CEU][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10774595	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10774596	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10774597	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10774598	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10849873	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10849875	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10849877	0.96[CEU][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849878	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10849879	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849880	0.96[CEU][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849882	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849884	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849885	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10849887	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10849889	0.96[CEU][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10849891	0.96[CEU][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11065549	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065551	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065563	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065565	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065575	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065576	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065577	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065578	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065579	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11065582	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11065583	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11065585	0.96[CEU][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11838335	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12427382	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12578785	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12581843	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12581861	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2288154	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3751131	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3817543	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817544	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3817545	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3817546	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3817547	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3817549	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3817551	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4081775	0.96[CEU][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4980986	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57185007	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57889600	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57971979	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58609847	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58849369	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59103597	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59190874	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61953461	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61953462	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61953497	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61955092	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61955131	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61955132	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61955138	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6489812	0.84[AMR][1000 genomes]
rs7972181	0.81[ASN][1000 genomes]
rs9300314	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs951498	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9634167	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9634168	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121861400-121903600	Weak transcription	Right Atrium	heart
2	chr12:121868000-121893600	Weak transcription	Psoas Muscle	Psoas
3	chr12:121879200-121898600	Weak transcription	HSMMtube	muscle
4	chr12:121879200-121903400	Weak transcription	Hela-S3	cervix
5	chr12:121879200-121904000	Weak transcription	Small Intestine	intestine
6	chr12:121880000-121903600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr12:121880000-121904000	Weak transcription	Aorta	Aorta
8	chr12:121880800-121902800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr12:121881800-121903400	Weak transcription	A549	lung
10	chr12:121883200-121903600	Weak transcription	Brain Anterior Caudate	brain
11	chr12:121883400-121893800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr12:121883400-121903200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:121885200-121896200	Strong transcription	Fetal Stomach	stomach
14	chr12:121885600-121896200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:121885600-121903600	Weak transcription	Liver	Liver
16	chr12:121886200-121896200	Strong transcription	Dnd41	blood
17	chr12:121886400-121894200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:121887200-121902200	Weak transcription	Fetal Brain Male	brain
19	chr12:121888600-121895200	Enhancers	Placenta	Placenta
20	chr12:121889000-121893200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr12:121889400-121894400	Strong transcription	Thymus	Thymus
22	chr12:121889400-121902000	Weak transcription	K562	blood
23	chr12:121889800-121894800	Enhancers	Esophagus	oesophagus
24	chr12:121889800-121903400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr12:121890200-121893400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr12:121890200-121893800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr12:121890200-121899200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr12:121890200-121903400	Weak transcription	Fetal Lung	lung
29	chr12:121890400-121902800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr12:121890400-121903400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr12:121890600-121894200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr12:121890600-121898200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr12:121890800-121893200	Weak transcription	Fetal Brain Female	brain
34	chr12:121890800-121893400	Weak transcription	Fetal Thymus	thymus
35	chr12:121890800-121894600	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr12:121890800-121896200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr12:121890800-121898600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr12:121890800-121902200	Weak transcription	HepG2	liver
39	chr12:121890800-121902200	Weak transcription	NHLF	lung
40	chr12:121890800-121902800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr12:121890800-121903400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr12:121890800-121903400	Weak transcription	Duodenum Mucosa	Duodenum
43	chr12:121890800-121903400	Weak transcription	Fetal Intestine Large	intestine
44	chr12:121890800-121903400	Weak transcription	HMEC	breast
45	chr12:121890800-121903400	Weak transcription	NHEK	skin
46	chr12:121890800-121903600	Weak transcription	NHDF-Ad	bronchial
47	chr12:121891000-121893400	Weak transcription	Primary B cells from cord blood	blood
48	chr12:121891000-121894600	Weak transcription	Left Ventricle	heart
49	chr12:121891000-121895000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr12:121891000-121895200	Strong transcription	GM12878-XiMat	blood

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