Variant report

Variant	rs11838335
Chromosome Location	chr12:121891698-121891699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121844064..121845743-chr12:121890048..121892502,2	K562	blood:
2	chr12:121890806..121892891-chr12:121895459..121897017,2	K562	blood:
3	chr12:121755526..121757349-chr12:121890334..121892090,2	K562	blood:
4	chr12:121888904..121894167-chr12:121900825..121906643,6	K562	blood:
5	chr12:121878313..121883290-chr12:121886772..121892641,6	MCF-7	breast:
6	chr12:121870653..121873379-chr12:121889843..121892356,2	K562	blood:
7	chr12:121891205..121893580-chr12:121898932..121901141,2	MCF-7	breast:
8	chr12:121883486..121886265-chr12:121890331..121891870,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000089094	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10444489	1.00[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10444491	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10444492	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1064951	1.00[CEU][hapmap];0.98[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10744763	1.00[CEU][hapmap];0.97[GIH][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs10744764	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10774594	0.96[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10774595	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10774596	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10774597	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10774598	1.00[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10849873	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10849875	0.81[EUR][1000 genomes]
rs10849877	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10849878	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10849879	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10849880	0.96[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10849882	0.92[CEU][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10849884	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10849885	0.96[CEU][hapmap];0.81[GIH][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10849887	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10849889	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849891	0.96[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11065549	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11065551	0.88[EUR][1000 genomes]
rs11065563	0.88[EUR][1000 genomes]
rs11065565	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11065575	0.96[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11065576	0.96[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11065577	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11065578	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11065579	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11065582	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11065583	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11065585	0.96[CEU][hapmap];0.81[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12427382	0.96[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12578785	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12581843	0.96[CEU][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12581861	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2288154	1.00[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3751131	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3817543	1.00[CEU][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3817544	1.00[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3817545	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3817546	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3817547	0.83[EUR][1000 genomes]
rs3817549	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3817551	1.00[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4081775	0.96[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4980986	0.84[MEX][hapmap]
rs4980994	0.84[MEX][hapmap]
rs57185007	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57889600	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57971979	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58609847	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58849369	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59103597	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59190874	0.88[EUR][1000 genomes]
rs61953461	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61953462	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61953497	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61955092	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61955131	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61955132	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61955138	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9300314	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs951498	0.96[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9634167	1.00[CEU][hapmap];0.82[CHD][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9634168	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11838335	P2RX7	cis	cerebellum	SCAN
rs11838335	TAOK3	cis	parietal	SCAN
rs11838335	TMEM120B	cis	cerebellum	SCAN
rs11838335	NME2P1	cis	cerebellum	SCAN
rs11838335	PEBP1	cis	parietal	SCAN

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121861400-121903600	Weak transcription	Right Atrium	heart
2	chr12:121868000-121893600	Weak transcription	Psoas Muscle	Psoas
3	chr12:121879200-121892400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:121879200-121898600	Weak transcription	HSMMtube	muscle
5	chr12:121879200-121903400	Weak transcription	Hela-S3	cervix
6	chr12:121879200-121904000	Weak transcription	Small Intestine	intestine
7	chr12:121880000-121903600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:121880000-121904000	Weak transcription	Aorta	Aorta
9	chr12:121880800-121902800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:121881800-121903400	Weak transcription	A549	lung
11	chr12:121883200-121891800	Weak transcription	Brain Substantia Nigra	brain
12	chr12:121883200-121892800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr12:121883200-121903600	Weak transcription	Brain Anterior Caudate	brain
14	chr12:121883400-121892000	Weak transcription	Brain Angular Gyrus	brain
15	chr12:121883400-121893000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:121883400-121893800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr12:121883400-121903200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr12:121885200-121896200	Strong transcription	Fetal Stomach	stomach
19	chr12:121885600-121892400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:121885600-121896200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:121885600-121903600	Weak transcription	Liver	Liver
22	chr12:121886200-121896200	Strong transcription	Dnd41	blood
23	chr12:121886400-121894200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:121887200-121902200	Weak transcription	Fetal Brain Male	brain
25	chr12:121888600-121891800	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr12:121888600-121895200	Enhancers	Placenta	Placenta
27	chr12:121889000-121892800	Weak transcription	Fetal Heart	heart
28	chr12:121889000-121893200	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr12:121889400-121894400	Strong transcription	Thymus	Thymus
30	chr12:121889400-121902000	Weak transcription	K562	blood
31	chr12:121889800-121894800	Enhancers	Esophagus	oesophagus
32	chr12:121889800-121903400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr12:121890200-121892200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr12:121890200-121892400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr12:121890200-121893400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr12:121890200-121893800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr12:121890200-121899200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr12:121890200-121903400	Weak transcription	Fetal Lung	lung
39	chr12:121890400-121893000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr12:121890400-121902800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr12:121890400-121903400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr12:121890600-121892200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr12:121890600-121894200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr12:121890600-121898200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr12:121890800-121892000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr12:121890800-121892600	Enhancers	Adipose Nuclei	Adipose
47	chr12:121890800-121892800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr12:121890800-121893000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr12:121890800-121893000	Weak transcription	Ovary	ovary
50	chr12:121890800-121893200	Weak transcription	Fetal Brain Female	brain

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