Variant report

Variant	rs10849891
Chromosome Location	chr12:121911602-121911603
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121903708..121907527-chr12:121909090..121912019,3	K562	blood:
2	chr12:121903815..121906765-chr12:121910137..121911892,2	MCF-7	breast:
3	chr12:121904155..121907527-chr12:121908588..121911901,5	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10444489	0.96[CEU][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10444491	0.87[AMR][1000 genomes]
rs10444492	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1064951	0.96[CEU][hapmap];0.88[CHD][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10744763	0.96[CEU][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10744764	0.96[CEU][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10774594	0.92[CEU][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10774595	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10774596	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10774597	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10774598	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10849873	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849875	0.80[AMR][1000 genomes]
rs10849877	0.92[CEU][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849878	0.92[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10849879	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849880	0.92[CEU][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849882	0.88[CEU][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849884	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10849885	0.92[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849887	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10849889	1.00[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11065549	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065551	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065563	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065565	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065575	0.92[CEU][hapmap];0.86[CHD][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065576	0.92[CEU][hapmap];0.91[CHD][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065577	0.96[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065578	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065579	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11065582	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11065583	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11065585	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11838335	0.96[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12427382	0.92[CEU][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12578785	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12581843	0.92[CEU][hapmap];0.87[CHD][hapmap];0.90[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12581861	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2288154	0.96[CEU][hapmap];0.91[CHD][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28604990	0.87[ASW][hapmap];1.00[YRI][hapmap]
rs28663167	0.87[ASW][hapmap];1.00[YRI][hapmap]
rs3751131	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817543	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817544	0.96[CEU][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817545	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817546	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817547	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3817549	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817551	0.96[CEU][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4081775	0.92[CEU][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4980986	0.87[ASW][hapmap];0.82[CEU][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.96[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4980994	0.87[ASW][hapmap];0.82[CEU][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs57185007	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57889600	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57971979	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58609847	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58849369	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59103597	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59190874	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61953461	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61953462	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61953497	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61955092	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61955131	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61955132	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61955138	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6489812	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7972181	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9300314	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs951498	0.92[CEU][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9634167	0.96[CEU][hapmap];0.91[CHD][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10849891	TMEM120B	cis	cerebellum	SCAN
rs10849891	TAOK3	cis	parietal	SCAN
rs10849891	NME2P1	cis	cerebellum	SCAN

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121905800-121923200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:121906000-121916600	Weak transcription	Gastric	stomach
3	chr12:121906000-121921400	Weak transcription	Thymus	Thymus
4	chr12:121906000-121927400	Weak transcription	Lung	lung
5	chr12:121906000-121927600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:121906000-121927600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:121906000-121937800	Weak transcription	Aorta	Aorta
8	chr12:121906000-121938000	Weak transcription	Left Ventricle	heart
9	chr12:121906200-121912000	Weak transcription	Fetal Intestine Small	intestine
10	chr12:121906200-121914000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:121906200-121914600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr12:121906200-121914600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr12:121906200-121919800	Weak transcription	Fetal Thymus	thymus
14	chr12:121906200-121920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:121906200-121922800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr12:121906200-121927400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr12:121906200-121927600	Weak transcription	Spleen	Spleen
18	chr12:121906200-121928200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr12:121906200-121938000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr12:121906400-121912000	Weak transcription	Fetal Stomach	stomach
21	chr12:121906400-121912600	Weak transcription	Dnd41	blood
22	chr12:121906400-121914400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:121906400-121917600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr12:121906400-121917800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr12:121906400-121919000	Weak transcription	GM12878-XiMat	blood
26	chr12:121906400-121920400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:121906400-121921400	Weak transcription	Fetal Brain Male	brain
28	chr12:121906400-121921600	Weak transcription	Primary T cells from cord blood	blood
29	chr12:121906400-121927600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr12:121906400-121929000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr12:121906400-121933400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr12:121906400-121933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr12:121906400-121933800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr12:121906600-121914600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr12:121906600-121914600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr12:121906600-121921000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr12:121906600-121927400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr12:121906600-121927600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr12:121906600-121927600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr12:121906600-121927600	Weak transcription	Fetal Brain Female	brain
41	chr12:121906600-121928000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr12:121906600-121938000	Weak transcription	NHDF-Ad	bronchial
43	chr12:121907800-121912400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr12:121908400-121927600	Weak transcription	Primary B cells from cord blood	blood
45	chr12:121908400-121928000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr12:121908600-121920600	Weak transcription	Fetal Muscle Leg	muscle
47	chr12:121908600-121927600	Weak transcription	Brain Hippocampus Middle	brain
48	chr12:121908800-121931400	Weak transcription	Fetal Lung	lung
49	chr12:121909200-121920600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr12:121909400-121914400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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