Variant report

Variant	rs10849878
Chromosome Location	chr12:121844292-121844293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:121843847-121844326	GM12891	blood:	n/a	n/a
2	POLR2A	chr12:121844227-121844317	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr12:121843870-121844390	GM12892	blood:	n/a	n/a
4	POLR2A	chr12:121843968-121844306	GM12878	blood:	n/a	n/a
5	POLR2A	chr12:121844043-121844334	HepG2	liver:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121844064..121845743-chr12:121890048..121892502,2	K562	blood:
2	chr12:121843243..121845458-chr12:121865314..121867172,2	K562	blood:
3	chr12:121843243..121846458-chr12:121865314..121867190,3	K562	blood:
4	chr12:121842475..121844686-chr12:121864287..121866762,2	MCF-7	breast:
5	chr12:121844060..121846748-chr12:121851196..121853703,2	K562	blood:

No data

Variant related genes	Relation type
RNF34	TF binding region

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10444489	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10444491	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10444492	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1064951	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10744763	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10744764	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10774594	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10774595	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10774596	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10774597	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10774598	0.96[CEU][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10849873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10849875	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849877	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849879	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849882	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849884	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849885	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10849887	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10849889	0.92[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10849891	0.92[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11065549	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065551	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065563	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065565	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065575	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065576	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065577	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065578	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065579	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11065582	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11065583	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11065585	0.93[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11838335	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12427382	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12578785	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12581843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12581861	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2288154	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3751131	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817543	0.96[CEU][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3817544	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817545	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817546	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817547	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817549	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817551	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4081775	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4980986	0.82[JPT][hapmap]
rs4980994	0.88[JPT][hapmap]
rs57185007	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57889600	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57971979	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58609847	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58849369	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59103597	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59190874	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61953461	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61953462	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61953497	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61955092	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61955131	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61955132	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61955138	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9300314	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs951498	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9634167	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9634168	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121838800-121852600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:121839000-121852600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:121839000-121853800	Weak transcription	Ovary	ovary
4	chr12:121839000-121854800	Weak transcription	Gastric	stomach
5	chr12:121839000-121855200	Weak transcription	Fetal Brain Male	brain
6	chr12:121839000-121855400	Weak transcription	Aorta	Aorta
7	chr12:121839000-121855400	Weak transcription	Esophagus	oesophagus
8	chr12:121839000-121855400	Weak transcription	Pancreas	Pancrea
9	chr12:121839000-121855400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr12:121839000-121861000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:121839000-121866400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr12:121839000-121866400	Weak transcription	Small Intestine	intestine
13	chr12:121839200-121854800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr12:121839200-121855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:121839200-121855400	Weak transcription	Right Ventricle	heart
16	chr12:121839200-121855600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr12:121839200-121856800	Weak transcription	HSMMtube	muscle
18	chr12:121839200-121860800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr12:121839400-121844800	Weak transcription	Colonic Mucosa	Colon
20	chr12:121839600-121854800	Weak transcription	Stomach Mucosa	stomach
21	chr12:121839800-121844400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:121839800-121855200	Weak transcription	Brain Angular Gyrus	brain
23	chr12:121840000-121855200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr12:121840400-121846600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:121840400-121847800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr12:121840400-121852000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr12:121840600-121847600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:121840600-121847800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr12:121840600-121848800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr12:121840600-121855000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr12:121840800-121844400	Weak transcription	Primary T cells from cord blood	blood
32	chr12:121840800-121846000	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr12:121840800-121847000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr12:121840800-121847400	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr12:121840800-121852600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr12:121841000-121844600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr12:121841200-121845200	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr12:121841200-121847600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr12:121841200-121848000	Strong transcription	Fetal Thymus	thymus
40	chr12:121841400-121844800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr12:121841400-121845200	Strong transcription	NH-A	brain
42	chr12:121841400-121845400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr12:121841400-121846000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr12:121841400-121846000	Strong transcription	Osteobl	bone
45	chr12:121841400-121846400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr12:121841400-121847800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr12:121841400-121874600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr12:121841600-121845200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr12:121841600-121846000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr12:121841800-121847200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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